View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_197 (Length: 235)
Name: NF20633_high_197
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_197 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40204573 - 40204350
Alignment:
| Q |
1 |
aataccggaatttctataaggatcatggagtatgaatatgcaaaggctatgtcaccaagagcttgaaaactcccccaaactttctgagcttttgttacat |
100 |
Q |
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| T |
40204573 |
aatacctgaatttctataaggatcatggagtatgaatatgcaaaggctatgtcaccaagagcttgaaaactcccccaaactttctgagcttttgttacat |
40204474 |
T |
|
| Q |
101 |
cagttaccccggtcacggttccatcaatctttttattttctattacatgaccaatttgaatcaaacannnnnnnnattatagacaataaaaggaaataaa |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
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| T |
40204473 |
cagttaccccggttacggttccatcaatctttttattttctattacatgaccaatttgaatcaaacattttttttattatagacaataaaagaatataaa |
40204374 |
T |
|
| Q |
201 |
t--tatatgtgtagaattacatat |
222 |
Q |
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| T |
40204373 |
ttatatatgtgtagaattacatat |
40204350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 40208619 - 40208477
Alignment:
| Q |
1 |
aataccggaatttctataaggatcatggagtatgaatatgcaaaggctatgtcaccaagagcttgaaaactcccccaaactttctgagcttttgttacat |
100 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
40208619 |
aatacctgaatttctataaggatcatggagtatgagtatgcaaaggctatgtcaccaagagcttgcaaactcccccaaactttctgagcttttgtcacat |
40208520 |
T |
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| Q |
101 |
cagttaccccggtcacggttccatcaatctttttattttctat |
143 |
Q |
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| T |
40208519 |
cagttaccccagccatggttccatcaatctttttatttcctat |
40208477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 40200985 - 40200843
Alignment:
| Q |
1 |
aataccggaatttctataaggatcatggagtatgaatatgcaaaggctatgtcaccaagagcttgaaaactcccccaaactttctgagcttttgttacat |
100 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
40200985 |
aatacctgaatttctataaggatcatggagtatgcgtatgcaaaagctatgtcaccaagagcttgcaaactcccccaaactttctgagcttttgtcacat |
40200886 |
T |
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| Q |
101 |
cagttaccccggtcacggttccatcaatctttttattttctat |
143 |
Q |
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| T |
40200885 |
cagttaccccagccatggttccatcaatctttttatttcctat |
40200843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 44305644 - 44305698
Alignment:
| Q |
28 |
gagtatgaatatgcaaaggctatgtcaccaagagcttgaaaactcccccaaactt |
82 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||| | ||||| |||| |
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| T |
44305644 |
gagtatgaataagcaaaggctatgtcaccaagagcttggaaaattccccacactt |
44305698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 44315397 - 44315461
Alignment:
| Q |
31 |
tatgaatatgcaaaggctatgtcaccaagagcttgaaaactcccccaaactttctgagcttttgt |
95 |
Q |
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| T |
44315397 |
tatgaatatgcaaaggctatgttgccaagagcttggaaagttccccatactttttgggcttttgt |
44315461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 10298805 - 10298880
Alignment:
| Q |
8 |
gaatttctataaggatcatggagtatgaatatgcaaaggctatgtcaccaagagcttgaaaactcccccaaacttt |
83 |
Q |
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||||||||||||||||||| ||||| || || ||||||||||||| |||||||||||| ||||||| ||||||||| |
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| T |
10298805 |
gaatttctataaggatcattgagtaggagtaggcaaaggctatgttaccaagagcttggaaactcctccaaacttt |
10298880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 6250457 - 6250422
Alignment:
| Q |
31 |
tatgaatatgcaaaggctatgtcaccaagagcttga |
66 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
6250457 |
tatgaatatgcaaaggctatgttaccaagagcttga |
6250422 |
T |
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