View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_high_207 (Length: 221)

Name: NF20633_high_207
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_high_207
NF20633_high_207
[»] chr4 (1 HSPs)
chr4 (18-203)||(10100285-10100470)
[»] chr7 (1 HSPs)
chr7 (21-197)||(31427459-31427631)
[»] chr1 (1 HSPs)
chr1 (72-194)||(33898770-33898891)
[»] chr5 (1 HSPs)
chr5 (25-194)||(26528991-26529157)
[»] chr8 (9 HSPs)
chr8 (25-197)||(5830674-5830846)
chr8 (72-140)||(19403606-19403673)
chr8 (21-113)||(19409548-19409639)
chr8 (21-113)||(19470711-19470802)
chr8 (21-113)||(19524419-19524510)
chr8 (21-113)||(19541635-19541726)
chr8 (21-113)||(19456567-19456659)
chr8 (21-113)||(19590971-19591063)
chr8 (72-140)||(19375491-19375558)
[»] chr3 (4 HSPs)
chr3 (21-195)||(9164720-9164891)
chr3 (72-182)||(9029812-9029919)
chr3 (71-182)||(9035312-9035420)
chr3 (153-194)||(40741630-40741671)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 10100285 - 10100470
Alignment:
Q  18 cacagagtacttaaccgacaagtagggaaaagtacaaggagtatttgccc-agttaaaaaccaaactctaacttaagtatttaaataaagaagaggggtt 116  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  10100285 cacagagtacttaaccgacaagtagggaatagtacaaggggtatttgccccagttaaaaaccaaactctaacttaagtatttaaacaaagaagagggttt 10100384  T
Q  117 cgagtatcattcataatacaaacacggtcccccacttttttcttatcaagaaaccatttccaagatgttactttgatacctaataac 203  Q
     ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  10100385 -gagtatcattcataatacaaacacggtcttccacttttttctgatcaagaaaccatctccaagatgttagtttgatacctaataac 10100470  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 31427459 - 31427631
Alignment:
Q  21 agagtacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggggttcgag 120  Q
    ||||||||| ||| |||| | || |||||||||||||||| |||||| |  |||  |||| |||||||||||| |||| || |||||||||||||| |||    
T  31427459 agagtacttcacccacaacttggaaaaagtacaaggagtacttgccccgcaaaattccaacctctaacttaagcattttaacaaagaagaggggtt-gag 31427557  T
Q  121 tatcattcataatacaaacacggtcccccacttttttcttatcaagaaaccatttccaagatgttactttgatacct 197  Q
    || ||||||||||||||||| ||||||    |||||||||| ||||||||||| |  ||||| ||||||||||||||    
T  31427558 taccattcataatacaaacatggtccc---attttttcttagcaagaaaccatctttaagattttactttgatacct 31427631  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 33898770 - 33898891
Alignment:
Q  72 aaaaaccaaactctaacttaagtatttaaataaagaagaggggttcgagtatcattcataatacaaacacggtcccccacttttttcttatcaagaaacc 171  Q
    ||||| ||||||||||||||||||||||||  |||| ||||| || ||||| ||||||||||||||| |||||| ||   |||||| ||| |||||||||    
T  33898770 aaaaatcaaactctaacttaagtatttaaactaagatgagggttt-gagtaccattcataatacaaatacggtctccttttttttttttagcaagaaacc 33898868  T
Q  172 atttccaagatgttactttgata 194  Q
    || ||||||||||||||||||||    
T  33898869 atctccaagatgttactttgata 33898891  T

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Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 26529157 - 26528991
Alignment:
Q  25 tacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggggttcgagtatc 124  Q
    ||||||||| |||| | |||||||  |||||   |||||||||  | ||||| |||||||||||||||||||||||| |||||||| |||||  |||| |    
T  26529157 tacttaacccacaattcgggaaaatgacaagagatatttgccccttaaaaaatcaaactctaacttaagtatttaaacaaagaaga-gggtttaagtacc 26529059  T
Q  125 attcataatacaaacacggtcccccacttttttcttatcaagaaaccatttccaagatgttactttgata 194  Q
    |||||||||| | ||| |||||||  ||||||||||| ||| ||| ||| | ||||||||||||||||||    
T  26529058 attcataatagatacatggtcccc--cttttttcttagcaaaaaagcatcttcaagatgttactttgata 26528991  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 5830674 - 5830846
Alignment:
Q  25 tacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggggttcgagtatc 124  Q
    ||||||||| |||| | |||||||| |||||| ||| ||||||  | |||||  ||||||||||||||||||||||| || ||| | ||||| |||||||    
T  5830674 tacttaacccacaactcgggaaaagaacaaggggtacttgccccttaaaaaaataaactctaacttaagtatttaaacaatgaa-aagggtttgagtatc 5830772  T
Q  125 attcataatacaaacacggtcccccacttttttcttatcaagaaacc----atttccaagatgttactttgatacct 197  Q
    |||| |||||||||||||||  |||   ||||||||| |||||||||    || |||||||| ||||||||||||||    
T  5830773 attcgtaatacaaacacggtttccc---tttttcttagcaagaaaccctatatatccaagatattactttgatacct 5830846  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 19403673 - 19403606
Alignment:
Q  72 aaaaaccaaactctaacttaagtatttaaataaagaagaggggttcgagtatcattcataatacaaaca 140  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||| || ||||||    
T  19403673 aaaaaccaacctctaacttaagtatttaaacaaagaaga-gggtttgagtatcattcattatgcaaaca 19403606  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 19409639 - 19409548
Alignment:
Q  21 agagtacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggg 113  Q
    ||||||||||||| |||||| |||||||||| ||||  ||  ||||||   ||||||||| |||||||||||||||||||| |||||||||||    
T  19409639 agagtacttaacctacaagttgggaaaagtataagggttacatgcccaaa-aaaaaccaacctctaacttaagtatttaaacaaagaagaggg 19409548  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 19470711 - 19470802
Alignment:
Q  21 agagtacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggg 113  Q
    ||||||||||||| |||||| |||||||||| ||||  ||  ||||||   ||||||||| |||||||||||||||||||| |||||||||||    
T  19470711 agagtacttaacctacaagttgggaaaagtataagggttacatgcccaaa-aaaaaccaacctctaacttaagtatttaaacaaagaagaggg 19470802  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 19524419 - 19524510
Alignment:
Q  21 agagtacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggg 113  Q
    ||||||||||||| |||||| |||||||||| ||||  ||  ||||||   ||||||||| |||||||||||||||||||| |||||||||||    
T  19524419 agagtacttaacctacaagttgggaaaagtataagggttacatgcccaaa-aaaaaccaacctctaacttaagtatttaaacaaagaagaggg 19524510  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 19541635 - 19541726
Alignment:
Q  21 agagtacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggg 113  Q
    ||||||||||||| |||||| |||||||||| ||||  ||  ||||||   ||||||||| |||||||||||||||||||| |||||||||||    
T  19541635 agagtacttaacctacaagttgggaaaagtataagggttacatgcccaaa-aaaaaccaacctctaacttaagtatttaaacaaagaagaggg 19541726  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 19456659 - 19456567
Alignment:
Q  21 agagtacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggg 113  Q
    ||||||||||||| |||||| |||||||||| ||||  ||  || ||    ||||||||| |||||||||||||||||||| |||||||||||    
T  19456659 agagtacttaacctacaagttgggaaaagtataagggttacatgacccaaaaaaaaccaacctctaacttaagtatttaaacaaagaagaggg 19456567  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 19591063 - 19590971
Alignment:
Q  21 agagtacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggg 113  Q
    ||||||||||||| |||||| |||||||||| ||||  ||  || ||    ||||||||| |||||||||||||||||||| |||||||||||    
T  19591063 agagtacttaacctacaagttgggaaaagtataagggttacatgacccaaaaaaaaccaacctctaacttaagtatttaaacaaagaagaggg 19590971  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 19375558 - 19375491
Alignment:
Q  72 aaaaaccaaactctaacttaagtatttaaataaagaagaggggttcgagtatcattcataatacaaaca 140  Q
    ||||||||| |||||| ||||||||||||| ||| || | ||||| ||||||||||||| |||||||||    
T  19375558 aaaaaccaacctctaatttaagtatttaaacaaataa-aagggtttgagtatcattcattatacaaaca 19375491  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 9164891 - 9164720
Alignment:
Q  21 agagtacttaaccgacaagtagggaaaagtacaaggagtatttgcccagttaaaaaccaaactctaacttaagtatttaaataaagaagaggggttcgag 120  Q
    ||||||| ||||| |||| | | ||||||||||| | |||||||||| || ||||| ||||||| |||||||||||||||| ||||||||  |||| |||    
T  9164891 agagtacataacctacaattcgagaaaagtacaaagtgtatttgccccgtaaaaaatcaaactcaaacttaagtatttaaacaaagaaga-tggtttgag 9164793  T
Q  121 tatcattcataatacaaacacggtcccccacttttttcttatcaagaaaccatttccaagatgttactttgatac 195  Q
    || | || |||||| ||||   ||||||   |||||| ||| ||||||||| | |||||||||||||||||||||    
T  9164792 taccgttaataataaaaacgtagtcccc--ttttttttttagcaagaaaccgtctccaagatgttactttgatac 9164720  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 9029812 - 9029919
Alignment:
Q  72 aaaaaccaaactctaacttaagtatttaaataaagaagaggggttcgagtatcattcataatacaaacacggtcccccacttttttcttatcaagaaacc 171  Q
    |||| ||||||||||||||||||||||||| |||||||| | ||| |||||||||| || ||| |||||||||  ||||||||||||||  ||||||| |    
T  9029812 aaaatccaaactctaacttaagtatttaaacaaagaaga-gagtttgagtatcatttattatataaacacggt--cccacttttttcttgacaagaaagc 9029908  T
Q  172 atttccaagat 182  Q
    || | ||||||    
T  9029909 atctacaagat 9029919  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 9035312 - 9035420
Alignment:
Q  71 taaaaaccaaactctaacttaagtatttaaataaagaagaggggttcgagtatcattcataatacaaacacggtcccccacttttttcttatcaagaaac 170  Q
    |||||| ||||||||||||||||||| |||| ||||| || ||||| ||||| ||||||||||||||||||  | || ||  ||||||||| |||| |||    
T  9035312 taaaaaacaaactctaacttaagtatataaacaaagatga-gggtttgagtaccattcataatacaaacacacttcctca--tttttcttaacaaggaac 9035408  T
Q  171 catttccaagat 182  Q
    ||| ||||||||    
T  9035409 catctccaagat 9035420  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 40741630 - 40741671
Alignment:
Q  153 tttttcttatcaagaaaccatttccaagatgttactttgata 194  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||    
T  40741630 tttttcttagcaagaaaccatctccaagatgttacttagata 40741671  T

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