View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_21 (Length: 576)
Name: NF20633_high_21
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 29025017 - 29024451
Alignment:
| Q |
1 |
tctcaattgctcacatgtcctttgatattctcaaaatgcccttgtttataccgattagaagttaagattcgattgaaagttatctttccacttgatgtgt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
29025017 |
tctcaattgctcacatgtcctttaatattctcaaaatgcccttgtttataccgattagaagttaagattcgattgaaagttatctttccgcttgatgtat |
29024918 |
T |
|
| Q |
101 |
attggaatatatataaggtaacaacttttgtactaccatttcttctactacgatcaaccattcaatccatccaaagnnnnnnnnnnattatgaaatttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
29024917 |
attggaatatatataaggtaacaacttttgtactaccatttcttctactacgatcaaccatttaatccttccaaagttttttttt-attatgaaatttgt |
29024819 |
T |
|
| Q |
201 |
gtctcaaatcatcattctttcatttataaatactttc-aagactcatcttgtatcataaaaaatacaatacatcttttttaaaccaatccattttatttt |
299 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024818 |
gtctcaaatcaccattctttcatttataaatactttctaagactcatcttgtatcataaaaaatacaatacatcttttttaaaccaatccattttatttt |
29024719 |
T |
|
| Q |
300 |
acaggttttaccctagccctagcatgcatgttcacatgccaaatcttcaaaacgacatcaaaataatatgaaccccttaaagacaaagtggtcttagtta |
399 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29024718 |
acaggttttacccttgccctagcatgcatgttcacatgccaaatcttcaaaacgacatcaaaataatatgaaccacttaaagacaaagtggtcttagtta |
29024619 |
T |
|
| Q |
400 |
tcataaattcatcaatgttcttatcttatctgtcttcgttgcaaacattgaataatgatataactgtataacaataacaaggcaatgaggcatcttatcc |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024618 |
tcataaattcatcaatgttcttatcttatctgtcttcgttgcaaacattgaataatgatataactgtataacaataacaaggcaatgaggcatcttatcc |
29024519 |
T |
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| Q |
500 |
atcaaggtatccataaattctaaattgcaagttgagactcacatcaatttttaatctataagaataat |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024518 |
atcaaggtatccataaattctaaattgcaagttgagactcacatcaatttttaatctataagaataat |
29024451 |
T |
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