View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_213 (Length: 216)
Name: NF20633_high_213
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_213 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 2333343 - 2333159
Alignment:
| Q |
15 |
cacagagatcgcccgtggtggccatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttctggtaaaaagcaggtggaaaag |
114 |
Q |
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| T |
2333343 |
cacagagatcgcccgtggtggccatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttccggttaaaagcaggtggaaaag |
2333244 |
T |
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| Q |
115 |
attaagattttcgcaaacttttctagaaaaatttctttctggcatctgagcaagaccagcaagcttaattaagcttacacattct |
199 |
Q |
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| T |
2333243 |
attaagattttcgcaaacttttctagaaaaaattctttctggcatctgagcaagaccagcaagcttaattaagcttacacattct |
2333159 |
T |
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Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 47778466 - 47778282
Alignment:
| Q |
15 |
cacagagatcgcccgtggtggccatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttctggtaaaaagcaggtggaaaag |
114 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47778466 |
cacagagatcgcccgtggtgggcatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttctggtaaaaagcaggtggaaaag |
47778367 |
T |
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| Q |
115 |
attaagattttcgcaaacttttctagaaaaatttctttctggcatctgagcaagaccagcaagcttaattaagcttacacattct |
199 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47778366 |
attaagattttggcaaacttttctagaaaaaattctttctggcatctgagcaagaccagcaagcttaattaagcttacacattct |
47778282 |
T |
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