View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_high_215 (Length: 215)

Name: NF20633_high_215
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_high_215
NF20633_high_215
[»] chr1 (9 HSPs)
chr1 (11-146)||(31277827-31277963)
chr1 (146-209)||(50099684-50099747)
chr1 (147-209)||(50303874-50303936)
chr1 (144-209)||(44592665-44592730)
chr1 (154-206)||(36156901-36156953)
chr1 (147-209)||(43411016-43411078)
chr1 (147-209)||(43022627-43022689)
chr1 (150-209)||(27773631-27773690)
chr1 (146-199)||(26633083-26633136)
[»] chr4 (10 HSPs)
chr4 (147-209)||(4608201-4608263)
chr4 (147-209)||(18493732-18493794)
chr4 (147-209)||(22375837-22375899)
chr4 (147-209)||(23237458-23237520)
chr4 (151-209)||(27513000-27513058)
chr4 (147-209)||(39606238-39606300)
chr4 (147-209)||(54508510-54508572)
chr4 (148-209)||(34021248-34021309)
chr4 (147-209)||(32595039-32595101)
chr4 (149-209)||(18502073-18502133)
[»] chr3 (4 HSPs)
chr3 (147-209)||(22775201-22775263)
chr3 (147-209)||(26769761-26769823)
chr3 (144-209)||(37224468-37224533)
chr3 (147-209)||(37057602-37057664)
[»] chr2 (3 HSPs)
chr2 (147-209)||(2096180-2096242)
chr2 (147-184)||(1043249-1043286)
chr2 (147-184)||(21612730-21612767)
[»] chr6 (1 HSPs)
chr6 (148-209)||(7590437-7590498)
[»] chr7 (9 HSPs)
chr7 (147-209)||(23333245-23333307)
chr7 (146-209)||(27571542-27571605)
chr7 (150-209)||(27098832-27098891)
chr7 (150-209)||(27179412-27179471)
chr7 (145-184)||(303920-303959)
chr7 (147-184)||(5481251-5481288)
chr7 (147-184)||(41533087-41533124)
chr7 (147-183)||(33036024-33036060)
chr7 (144-184)||(36558810-36558850)
[»] chr5 (6 HSPs)
chr5 (150-209)||(12947237-12947296)
chr5 (151-209)||(39570909-39570967)
chr5 (150-209)||(12933025-12933084)
chr5 (147-184)||(21361580-21361617)
chr5 (147-184)||(39684409-39684446)
chr5 (148-209)||(42091883-42091944)
[»] chr8 (1 HSPs)
chr8 (153-209)||(33538307-33538363)
[»] scaffold0049 (1 HSPs)
scaffold0049 (145-184)||(15811-15850)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 31277963 - 31277827
Alignment:
Q  11 cgaagaaaatttattagatcggccctaaaaagacgattcaacaatcatgtaattcgtgaaaaaat-gtaaactatataatacaaataatacagttcttgt 109  Q
    |||| |||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||||||||    
T  31277963 cgaataaaatttattagatcgaccctaaaaagataattcaacaatcatgtaattcgtgaaaaaattgtaaactatataatatgaataatacggttcttgt 31277864  T
Q  110 atctcatcctcaagagctaatagtatatgattaaaag 146  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  31277863 atctcatcctcaaaagctaataatatatgattaaaag 31277827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 50099747 - 50099684
Alignment:
Q  146 gcagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50099747 gcagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 50099684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 50303874 - 50303936
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  50303874 cagcggcgaagctagcaataattttatgaggtggccatccgaaagtaaccaaagtcataaaaa 50303936  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 44592730 - 44592665
Alignment:
Q  144 aagcagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  44592730 aagcagtggcgaagctagcaataattttatgaggtggccacccgaaagtaacaaaagtcataaaaa 44592665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 36156901 - 36156953
Alignment:
Q  154 gaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataa 206  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36156901 gaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataa 36156953  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 43411078 - 43411016
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43411078 cagcagcgaggctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaa 43411016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 43022689 - 43022627
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||| |||| |||||||||    
T  43022689 cagcggcgaagcttgcaataattttatgaggtggccatccgaaagtaatcaaaatcataaaaa 43022627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 27773690 - 27773631
Alignment:
Q  150 cggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||| |||||    
T  27773690 cggcgaagctagcaataattttatgaggtagccacccgaaagttaccgaagtcacaaaaa 27773631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 26633136 - 26633083
Alignment:
Q  146 gcagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaa 199  Q
    ||||||||||||||| ||| ||||||||||| ||| ||||||||| ||| ||||    
T  26633136 gcagcggcgaagctagcaacaattttatgagatggtcacccgaaattaatcaaa 26633083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 4608263 - 4608201
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4608263 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 4608201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 18493732 - 18493794
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18493732 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 18493794  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 22375837 - 22375899
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22375837 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 22375899  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 23237458 - 23237520
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23237458 cagcggcgaagctagcaataattttatgaggtggccacccaaaagtaaccaaagtcataaaaa 23237520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 27513058 - 27513000
Alignment:
Q  151 ggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27513058 ggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 27513000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 39606238 - 39606300
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  39606238 cagcggcgaagctagcaataattttatgaggtggccatccgaaagtaaccaaagtcataaaaa 39606300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 54508510 - 54508572
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54508510 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaatcaaagtcataaaaa 54508572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 34021248 - 34021309
Alignment:
Q  148 agcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34021248 agcggcgaagctagcaataattttatgaggtggccacccaaaagtaaccaaagtcataaaaa 34021309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 32595039 - 32595101
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  32595039 cagcggcgaagctagcaataattttttgaggtggccatccgaaagaaaccaaagtcataaaaa 32595101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 18502133 - 18502073
Alignment:
Q  149 gcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||| ||| ||| |||||    
T  18502133 gcggcgaagctagcaataattttatgaggtggccacccaaaactaacgaaattcacaaaaa 18502073  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 22775201 - 22775263
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22775201 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 22775263  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 26769761 - 26769823
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26769761 cagcggcgaagctagcaataattttatgaggtggccacccaaaagtaaccaaagtcataaaaa 26769823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 37224533 - 37224468
Alignment:
Q  144 aagcagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  37224533 aagcagtggcgaagctagcaataattttatgaggtggccacccgaaagtaacaaaagtcataaaaa 37224468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 37057664 - 37057602
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  37057664 cagcggcgaagctagcaataattttatgaggtgaccacccgaaagtaaccaaagttataaaaa 37057602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 2096242 - 2096180
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2096242 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 2096180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 1043249 - 1043286
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccac 184  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  1043249 cagcggcgaagctagcaataattctatgaggtggccac 1043286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 21612730 - 21612767
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccac 184  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  21612730 cagcggcgaagctagcaatatttttatgaggtggccac 21612767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 7590437 - 7590498
Alignment:
Q  148 agcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7590437 agcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 7590498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 23333245 - 23333307
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  23333245 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagttataaaaa 23333307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 27571542 - 27571605
Alignment:
Q  146 gcagcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  27571542 gcagcggcgaagctagcaataattttatgaggtggccaccctaaagtaaccaaagtcacaaaaa 27571605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 27098832 - 27098891
Alignment:
Q  150 cggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  27098832 cggcgaagctaacaataattttatgaggtggccaccccaaagtaatcaaagtcacaaaaa 27098891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 27179471 - 27179412
Alignment:
Q  150 cggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  27179471 cggcgaagctaacaataattttatgaggtggccaccccaaagtaatcaaagtcacaaaaa 27179412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 303920 - 303959
Alignment:
Q  145 agcagcggcgaagctaacaataattttatgaggtggccac 184  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  303920 agcagcggcgaagctagcaataattctatgaggtggccac 303959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 5481288 - 5481251
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccac 184  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  5481288 cagcggcgaagctagcaatatttttatgaggtggccac 5481251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 41533124 - 41533087
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccac 184  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  41533124 cagcggcgaagctagcaatatttttatgaggtggccac 41533087  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 33036024 - 33036060
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggcca 183  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  33036024 cagcggcgaaactagcaataattttatgaggtggcca 33036060  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 36558850 - 36558810
Alignment:
Q  144 aagcagcggcgaagctaacaataattttatgaggtggccac 184  Q
    ||||||||||||||||| ||||| ||| |||||||||||||    
T  36558850 aagcagcggcgaagctagcaatattttcatgaggtggccac 36558810  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 12947237 - 12947296
Alignment:
Q  150 cggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  12947237 cggcgaagctaacaataattttatgaggtggccacccgaaaataactaaagtcataaaaa 12947296  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 39570967 - 39570909
Alignment:
Q  151 ggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  39570967 ggcgaagctagcaataattttatgacgtggccatccgaaagtaacaaaagtcataaaaa 39570909  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 12933025 - 12933084
Alignment:
Q  150 cggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||||||| ||||||||||| |||||| ||||||||| |||| |||||||||||||    
T  12933025 cggcgaagctaataataattttataaggtggtcacccgaaaataactaaagtcataaaaa 12933084  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 21361617 - 21361580
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccac 184  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  21361617 cagcggcgaagctagcaatatttttatgaggtggccac 21361580  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 39684409 - 39684446
Alignment:
Q  147 cagcggcgaagctaacaataattttatgaggtggccac 184  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  39684409 cagcggcgaagctagcaataattctatgaggtggccac 39684446  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 42091883 - 42091944
Alignment:
Q  148 agcggcgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||| |||||| |||||||||||| | ||| | ||||||| ||||||||||||| |||||    
T  42091883 agcggcaaagctagcaataattttataaagtgactacccgaaggtaaccaaagtcacaaaaa 42091944  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 33538307 - 33538363
Alignment:
Q  153 cgaagctaacaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaa 209  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33538307 cgaagctagcaataattttatgaggtggtcacccgaaagtaaccaaagtcataaaaa 33538363  T

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Target: scaffold0049 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 15850 - 15811
Alignment:
Q  145 agcagcggcgaagctaacaataattttatgaggtggccac 184  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  15850 agcagcggcgaagctagcaataattctatgaggtggccac 15811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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