View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_218 (Length: 208)
Name: NF20633_high_218
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_218 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 53701083 - 53701275
Alignment:
| Q |
1 |
catcattcatattttccatcgatttctggtccttgtcatggtcacaagtacaagtactagtgttgtcaccaaaagaagaggatctactagtactagtact |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53701083 |
catcattcatattttctatcgatttctggtccttgtcatgttcacaagtacaagtactagtgttgtcaccaaaagaagaggatctactagtacttgtact |
53701182 |
T |
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| Q |
101 |
tgtgcttgaagacatgcttggtgtggctaagaatgttggtttatcttgtccagccataatcaccaatattttttcttcataaggtgtctgatc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
53701183 |
tgtgcttgaagacatgcttggtgtggctaagaatgttggtttatcttgtccagccataatcaccaatattttttcttcatacggtttctgatc |
53701275 |
T |
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