View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_24 (Length: 553)
Name: NF20633_high_24
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 7 - 536
Target Start/End: Original strand, 40708510 - 40709047
Alignment:
| Q |
7 |
ggagcagagatggtgggatttttagaagttatgaaggttttaggttctatctgagtttcttggtttggttttccaattttggttgatgttgagtttcaat |
106 |
Q |
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| T |
40708510 |
ggagaagagatggtgggatttttagaagttatgaaggttttaggttctatctgagtttcttggtttggttttccaattttggttgatgttgagtttcaat |
40708609 |
T |
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| Q |
107 |
caattttccatattgggagctaatatgtgatacagtttcaggtaagttttctagcaatttccttagttatagccaatttgatttannnnnnnnagaaaaa |
206 |
Q |
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| T |
40708610 |
caattttccatattgggagctaatatgtgatacagtttcaggtaagttttctagcaatttccttagttatagccaatttgattttttttttttagaaaaa |
40708709 |
T |
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| Q |
207 |
atagagatgaagagatttgataatccgcttagtggaataaggcttggtcgtccatattgaagagatttgatgaaaattgctgggaataaagagtttatag |
306 |
Q |
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| T |
40708710 |
atagagatgaagagatttgataatccgcttagtggaataaggcttggtcgtccatattgaagagatttgatgaaaattgctgggaataaagagtttatag |
40708809 |
T |
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| Q |
307 |
gataaaagagaacatggaggataaagagtaagggagtgctgagttgtt------------gacaatagaaaaactcagtgagtatcaataatcaaatgtt |
394 |
Q |
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| T |
40708810 |
gataaaagagaacatggaggataaagagtaagggagtgctgagttgttaagcggaggaaggacaatagaaaaactcagtgagtatcaataatcaaatgtt |
40708909 |
T |
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| Q |
395 |
gctttggttgatgaacatgattattgatcataagcaagcatgtgttgcacaatcaatcaagtgtcctttactcaattggtttaaatgcttaccgttatag |
494 |
Q |
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| T |
40708910 |
gctttggttgatgaacatgattattgatcataagcaagcatgtgttgca----caatcaagtgtcctttactcaattggtttaaatgcttaccgttatag |
40709005 |
T |
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| Q |
495 |
agtttatctaaccgttgttcttaggctttcatggccattaat |
536 |
Q |
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| T |
40709006 |
agtttatctaaccgttgttcttaggctttcatggccattaat |
40709047 |
T |
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