View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_high_25 (Length: 552)

Name: NF20633_high_25
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_high_25
NF20633_high_25
[»] chr4 (10 HSPs)
chr4 (19-202)||(30265281-30265463)
chr4 (19-202)||(30279832-30280014)
chr4 (19-202)||(30286724-30286907)
chr4 (278-391)||(30265541-30265654)
chr4 (278-391)||(30279641-30279754)
chr4 (278-391)||(30286533-30286646)
chr4 (416-541)||(30286382-30286508)
chr4 (416-512)||(30265679-30265776)
chr4 (416-512)||(30279519-30279616)
chr4 (281-316)||(46826711-46826746)
[»] chr8 (1 HSPs)
chr8 (281-316)||(17102208-17102243)
[»] chr2 (2 HSPs)
chr2 (281-316)||(14395163-14395198)
chr2 (281-313)||(35319358-35319390)
[»] chr3 (1 HSPs)
chr3 (281-313)||(49350855-49350887)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 5e-82; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 30265281 - 30265463
Alignment:
Q  19 cacacgactgacatggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30265281 cacacgactgacatggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaat 30265380  T
Q  119 ttacaccatgtaacagttttaatacctctttttacattaagtnnnnnnntaagggaaaccctagcttgtgtctttatgacacat 202  Q
    ||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  30265381 ttacaccatgt-acagttttaatacctctttttacattaagtaaaaaaataagggaaaccctagcttgtgtctttatgacacat 30265463  T

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Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 30280014 - 30279832
Alignment:
Q  19 cacacgactgacatggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30280014 cacacgactgacatggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaat 30279915  T
Q  119 ttacaccatgtaacagttttaatacctctttttacattaagtnnnnnnntaagggaaaccctagcttgtgtctttatgacacat 202  Q
    ||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  30279914 ttacaccatgt-acagttttaatacctctttttacattaagtaaaaaaataagggaaaccctagcttgtgtctttatgacacat 30279832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 30286907 - 30286724
Alignment:
Q  19 cacacgactgacatggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30286907 cacacgactgacatggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaat 30286808  T
Q  119 ttacaccatgtaacagttttaatacctctttttacatt-aagtnnnnnnntaagggaaaccctagcttgtgtctttatgacacat 202  Q
    ||||||||||| |||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||    
T  30286807 ttacaccatgt-acagttttaatacctctttttacattaaagtaaaaaaataagggaaaccctagcttgtgtctttatgacacat 30286724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 278 - 391
Target Start/End: Original strand, 30265541 - 30265654
Alignment:
Q  278 gtgataaatatttaccatttatagaatccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 377  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30265541 gtgataaatatttactatttatagaatccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 30265640  T
Q  378 gaaaccctacttga 391  Q
    ||||||||||||||    
T  30265641 gaaaccctacttga 30265654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 278 - 391
Target Start/End: Complemental strand, 30279754 - 30279641
Alignment:
Q  278 gtgataaatatttaccatttatagaatccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 377  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30279754 gtgataaatatttactatttatagaatccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 30279655  T
Q  378 gaaaccctacttga 391  Q
    ||||||||||||||    
T  30279654 gaaaccctacttga 30279641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 278 - 391
Target Start/End: Complemental strand, 30286646 - 30286533
Alignment:
Q  278 gtgataaatatttaccatttatagaatccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 377  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30286646 gtgataaatatttactatttatagaatccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 30286547  T
Q  378 gaaaccctacttga 391  Q
    ||||||||||||||    
T  30286546 gaaaccctacttga 30286533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 416 - 541
Target Start/End: Complemental strand, 30286508 - 30286382
Alignment:
Q  416 gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnn-atgacttcacatgttgtgtttataattattnn 514  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||         ||||||||||||||||||||||||||||||      
T  30286508 gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattattaa 30286409  T
Q  515 nnnnnnncattgtgtttataaattcat 541  Q
           ||||||||||||||||||||    
T  30286408 aaaaaaacattgtgtttataaattcat 30286382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 512
Target Start/End: Original strand, 30265679 - 30265776
Alignment:
Q  416 gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtg-nnnnnnnnatgacttcacatgttgtgtttataattatt 512  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  30265679 gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattatt 30265776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 512
Target Start/End: Complemental strand, 30279616 - 30279519
Alignment:
Q  416 gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnn-atgacttcacatgttgtgtttataattatt 512  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  30279616 gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattatt 30279519  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 316
Target Start/End: Original strand, 46826711 - 46826746
Alignment:
Q  281 ataaatatttaccatttatagaatccttaacatgtg 316  Q
    ||||||||||||||||||| ||||||||||||||||    
T  46826711 ataaatatttaccatttatggaatccttaacatgtg 46826746  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 316
Target Start/End: Original strand, 17102208 - 17102243
Alignment:
Q  281 ataaatatttaccatttatagaatccttaacatgtg 316  Q
    ||||||||||||||||||| ||||||||||||||||    
T  17102208 ataaatatttaccatttatggaatccttaacatgtg 17102243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 316
Target Start/End: Original strand, 14395163 - 14395198
Alignment:
Q  281 ataaatatttaccatttatagaatccttaacatgtg 316  Q
    |||||||||||||||||||| |||||||||||||||    
T  14395163 ataaatatttaccatttataaaatccttaacatgtg 14395198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 35319358 - 35319390
Alignment:
Q  281 ataaatatttaccatttatagaatccttaacat 313  Q
    |||||||||||| ||||||||||||||||||||    
T  35319358 ataaatatttactatttatagaatccttaacat 35319390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 49350855 - 49350887
Alignment:
Q  281 ataaatatttaccatttatagaatccttaacat 313  Q
    ||||||||||||||||||| |||||||||||||    
T  49350855 ataaatatttaccatttatggaatccttaacat 49350887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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