View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_high_28 (Length: 538)

Name: NF20633_high_28
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_high_28
NF20633_high_28
[»] chr2 (3 HSPs)
chr2 (10-439)||(1614879-1615302)
chr2 (16-391)||(24455839-24456207)
chr2 (388-437)||(24455400-24455449)
[»] chr8 (3 HSPs)
chr8 (19-391)||(43228075-43228439)
chr8 (170-369)||(14839131-14839323)
chr8 (395-437)||(43227620-43227662)
[»] chr3 (2 HSPs)
chr3 (162-393)||(49234306-49234533)
chr3 (162-391)||(49233735-49233959)
[»] chr1 (3 HSPs)
chr1 (162-391)||(50862518-50862741)
chr1 (338-391)||(47723984-47724037)
chr1 (338-391)||(47730976-47731029)
[»] chr7 (1 HSPs)
chr7 (170-369)||(27962367-27962559)


Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 1614879 - 1615302
Alignment:
Q  10 aagaatataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa 109  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1614879 aagaaaataagaaccaagagaacataagaaacaatctcaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa 1614978  T
Q  110 agcaacaggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaata 209  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  1614979 agcaacaggagaacaatacaaacagccggttaaaaagacaatatttttttt-gtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaata 1615077  T
Q  210 aaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgc 309  Q
    ||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615078 aaaccgatacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgc 1615172  T
Q  310 tgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattcttctt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615173 tgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattcttctt 1615272  T
Q  410 tcaagcttcacaatgttgaatttgcctacc 439  Q
    ||||||||||||||||||||||||||||||    
T  1615273 tcaagcttcacaatgttgaatttgcctacc 1615302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 24456207 - 24455839
Alignment:
Q  16 ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |||    
T  24456207 ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactatagagccaaactacaacaacctattcagaaaaactaac 24456108  T
Q  116 aggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacaca-tgaagacaaaggcaaagagaagaaaataaaacc 214  Q
    ||||||||||||||||||||| |||||||||||||||         ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  24456107 aggagaacaatacaaacagccagttaaaaagacaata-atttttttgtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaacc 24456009  T
Q  215 gatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctg 314  Q
    |||| |     ||||||||| | |  | |||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||||||| ||    
T  24456008 gatatg-----gtgcagctggacc--acagagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttg 24455916  T
Q  315 cactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 391  Q
    || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  24455915 cattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgca 24455839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 24455449 - 24455400
Alignment:
Q  388 tgcatatatagtcattcttctttcaagcttcacaatgttgaatttgccta 437  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24455449 tgcatatatagtcattcttctttcaagcttcacaatattgaatttgccta 24455400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 43228439 - 43228075
Alignment:
Q  19 agaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacagg 118  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43228439 agaaccaagagaacataagaaactatcccaaagaaaacaaaccaaaatcaactacactaaagagccaaactacaacaacctattctaaaaaagcaacagg 43228340  T
Q  119 agaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgata 218  Q
    ||| |||||||||||||| |||||||||||| ||         |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  43228339 agaccaatacaaacagccagttaaaaagacagta-ttttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgata 43228241  T
Q  219 cggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcact 318  Q
     |      |||||||| |||  | ||||| |||||||||| | |||| ||||||| ||||| |  ||| ||||||| | | |||||||||||||||||||    
T  43228240 tg-----ttgcagctggaac--acagagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcact 43228148  T
Q  319 acattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 391  Q
    |||||||||||||||  |||| ||| |||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  43228147 acattagtccacatgccgaaagccaactctaaattatgcagaaaatcaccccgatctcactccaaattatgca 43228075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 369
Target Start/End: Complemental strand, 14839323 - 14839131
Alignment:
Q  170 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 269  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  14839323 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 14839231  T
Q  270 aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 369  Q
    ||||  || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  14839230 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 14839131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 43227662 - 43227620
Alignment:
Q  395 atagtcattcttctttcaagcttcacaatgttgaatttgccta 437  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43227662 atagtcattcttctttcaagcttcacaatgttgaatttgccta 43227620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 162 - 393
Target Start/End: Original strand, 49234306 - 49234533
Alignment:
Q  162 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 261  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| ||||||||||||     
T  49234306 gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacaca 49234400  T
Q  262 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgc-aga 360  Q
    |||| |||||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||    
T  49234401 gggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatgcaaga 49234500  T
Q  361 aaatcacctcgatctctctccaaactatgcata 393  Q
    |||||||||||||||| ||||||| ||||||||    
T  49234501 aaatcacctcgatctcgctccaaattatgcata 49234533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 162 - 391
Target Start/End: Original strand, 49233735 - 49233959
Alignment:
Q  162 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 261  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| |||||| |||||     
T  49233735 gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacaca 49233829  T
Q  262 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 361  Q
    |||| |||| ||||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  49233830 gggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaa 49233929  T
Q  362 aatcacctcgatctctctccaaactatgca 391  Q
    ||||||||||||||| ||||||| ||||||    
T  49233930 aatcacctcgatctcgctccaaattatgca 49233959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 162 - 391
Target Start/End: Complemental strand, 50862741 - 50862518
Alignment:
Q  162 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 261  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||  ||| | ||||||     || |||| ||| ||| ||||||||||||     
T  50862741 gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacaca 50862648  T
Q  262 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 361  Q
    |||| ||||||| |||||||  || |||||||| ||||||| || ||||| | |||||||||||||||||||  ||||| ||||||||||||||||||||    
T  50862647 gggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatgcagaa 50862548  T
Q  362 aatcacctcgatctctctccaaactatgca 391  Q
    ||||||||||||||| ||||||| ||||||    
T  50862547 aatcacctcgatctcgctccaaattatgca 50862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 47724037 - 47723984
Alignment:
Q  338 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 391  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47724037 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47723984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 47731029 - 47730976
Alignment:
Q  338 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 391  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47731029 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 369
Target Start/End: Original strand, 27962367 - 27962559
Alignment:
Q  170 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 269  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  27962367 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 27962459  T
Q  270 aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 369  Q
    ||||  || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  27962460 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 27962559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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