View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_high_31 (Length: 512)

Name: NF20633_high_31
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_high_31
NF20633_high_31
[»] chr7 (3 HSPs)
chr7 (275-502)||(26194607-26194833)
chr7 (155-260)||(26194530-26194636)
chr7 (43-108)||(26194416-26194483)
[»] chr3 (4 HSPs)
chr3 (192-502)||(10696842-10697128)
chr3 (24-108)||(10696502-10696588)
chr3 (43-108)||(10697214-10697281)
chr3 (23-89)||(8799323-8799390)
[»] chr4 (5 HSPs)
chr4 (192-502)||(51959152-51959438)
chr4 (43-108)||(51959708-51959775)
chr4 (23-89)||(54316057-54316124)
chr4 (25-70)||(4404097-4404142)
chr4 (25-98)||(4402042-4402117)
[»] chr8 (5 HSPs)
chr8 (172-387)||(9134409-9134622)
chr8 (20-108)||(9133903-9133993)
chr8 (20-108)||(9134252-9134342)
chr8 (415-493)||(9134621-9134699)
chr8 (26-88)||(14999180-14999243)
[»] chr6 (1 HSPs)
chr6 (23-63)||(22748594-22748634)
[»] chr2 (5 HSPs)
chr2 (23-89)||(4371460-4371527)
chr2 (23-89)||(21265569-21265636)
chr2 (23-89)||(22563216-22563283)
chr2 (20-96)||(38418482-38418560)
chr2 (23-65)||(17200084-17200126)
[»] chr5 (2 HSPs)
chr5 (23-98)||(31193971-31194047)
chr5 (23-98)||(31194184-31194260)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 275 - 502
Target Start/End: Original strand, 26194607 - 26194833
Alignment:
Q  275 cccttttcaccatcgtcctctttttctctctctgacgcagttcccttccaccaccgccttcaattttgcattcttacatctgttgtaatatttcagcagg 374  Q
    |||||||||||| |||||||||||  |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26194607 cccttttcaccaccgtcctcttttcttctctctgacacagttgccttccaccaccgccttcaattttgcattcttacatctgtcgta-tatttcagcagg 26194705  T
Q  375 ttctatctaaaatcaattaaacagtttataacaccaattgattcatcaacctttatttgattttcaccttcattagagtagtgtttggattttgtatttg 474  Q
    ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26194706 ttcaatctaaaatcaatcaaacagtttataacaccaattgattcatcaacctttatgtgattttcaccttcattagagtagtgtttggattttgtatttg 26194805  T
Q  475 cgcaatggttcttcaattatctcctttg 502  Q
    ||||||||||||||||||| ||||||||    
T  26194806 cgcaatggttcttcaattacctcctttg 26194833  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 26194530 - 26194636
Alignment:
Q  155 ctccataacgtttt-cccaacacaccgcttccttttcccgtttcaccaccaccatctttccttctccgtcgccgctacccttttcaccaccgtcctcttt 253  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26194530 ctccataacgtttttcccaacacaccgcttccttttcccgtttcaccaccagcatctttccttctccgtcgccgctacccttttcaccaccgtcctcttt 26194629  T
Q  254 tcctctc 260  Q
    || ||||    
T  26194630 tcttctc 26194636  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 26194416 - 26194483
Alignment:
Q  43 atgctcaatttactccatttaggggttt--atgcatgacatgtggcaaacaaacatcctaaggctgag 108  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  26194416 atgctcaatttactccatttaggggtttggatgcatgacatgtggcaaacaaacatcctaaggctgag 26194483  T

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Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 192 - 502
Target Start/End: Complemental strand, 10697128 - 10696842
Alignment:
Q  192 cgtttcaccaccaccatctttccttctccgtcgccgctacccttttcaccaccgtcctcttttcctctccgtcgttgcctccgcccttttcaccatcgtc 291  Q
    |||||||||||| ||||||||||||||     |||||||||||||||||||||||||||||| |||||||||||   || ||||||| ||||            
T  10697128 cgtttcaccaccgccatctttccttct-----gccgctacccttttcaccaccgtcctctttccctctccgtcg---ccgccgccctcttca-------- 10697045  T
Q  292 ctctttttctctctctgacgcagttcccttccaccaccgccttcaattttgc-attcttacatctgttgtaatatttcagcaggttctatctaaaatcaa 390  Q
             |||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  10697044 ---------tctctctgacgcagctgccttccaccaccgccgtcaattttgccattcttacatctgttgtaatatttcagcaggttcaatctcaaatcaa 10696954  T
Q  391 ttaaacagtttataacaccaattgattcatcaacctttatttgattttcaccttcattagagtagtgtttggattttgtatttgcgcaatggttcttcaa 490  Q
    | ||||||||| ||||||||||| | || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  10696953 tcaaacagtttgtaacaccaatttaatcctcaacctttatttgattttcacctccattagagtagtgtttggattttgtatttgctcaatggttcttcaa 10696854  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 10696502 - 10696588
Alignment:
Q  24 ggtatgctcaatttaggcaatgctcaatttactccatttaggggttt--atgcatgacatgtggcaaacaaacatcctaaggctgag 108  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||||  ||||| ||||||||||||| |||||| | |||||||||    
T  10696502 ggtatgctccatttaggtaatgctcaatttagtccatttaggggtttggatgcaagacatgtggcaaaaaaacattcaaaggctgag 10696588  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 10697281 - 10697214
Alignment:
Q  43 atgctcaatttactccatttaggggttt--atgcatgacatgtggcaaacaaacatcctaaggctgag 108  Q
    |||||| ||||| |||||||||||||||  ||||| ||||||||||||| |||||||| |||||||||    
T  10697281 atgctccatttaatccatttaggggtttggatgcaagacatgtggcaaaaaaacatccgaaggctgag 10697214  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 8799323 - 8799390
Alignment:
Q  23 gggtatgctcaatttaggcaatgctcaatttactccatttaggggtt-tatgcatgacatgtggcaaa 89  Q
    |||||||||| |||||||| | |||| ||||||||||||||||| ||  ||||| |||||||||||||    
T  8799323 gggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgtggcaaa 8799390  T

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Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 192 - 502
Target Start/End: Original strand, 51959152 - 51959438
Alignment:
Q  192 cgtttcaccaccaccatctttccttctccgtcgccgctacccttttcaccaccgtcctcttttcctctccgtcgttgcctccgcccttttcaccatcgtc 291  Q
    |||||||||||| ||||||||||||||     |||||||||||||||||||||||||||||| |||||||||||| |||   ||||| ||||            
T  51959152 cgtttcaccaccgccatctttccttct-----gccgctacccttttcaccaccgtcctctttccctctccgtcgtcgcc---gccctcttca-------- 51959235  T
Q  292 ctctttttctctctctgacgcagttcccttccaccaccgccttcaattttgc-attcttacatctgttgtaatatttcagcaggttctatctaaaatcaa 390  Q
             |||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||  ||| |||| |||||||    
T  51959236 ---------tctctctgacgcagctgccttccaccaccgccgtcaattttgccattcttacatctgtcgtaatatttcagcaaattcaatctcaaatcaa 51959326  T
Q  391 ttaaacagtttataacaccaattgattcatcaacctttatttgattttcaccttcattagagtagtgtttggattttgtatttgcgcaatggttcttcaa 490  Q
    | ||||||||| ||||||||||||| || ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||    
T  51959327 tcaaacagtttgtaacaccaattgaatcctcaacctttatttgattttcacctcgattaaagtagtgtttggattttgtatttgcccaatggttcttcaa 51959426  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 51959775 - 51959708
Alignment:
Q  43 atgctcaatttactccatttaggggttt--atgcatgacatgtggcaaacaaacatcctaaggctgag 108  Q
    |||||||||||| || ||||||||||||  ||||| ||||||||||||| |||||||| |||||||||    
T  51959775 atgctcaatttagtctatttaggggtttggatgcaagacatgtggcaaaaaaacatccaaaggctgag 51959708  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 54316124 - 54316057
Alignment:
Q  23 gggtatgctcaatttaggcaatgctcaatttactccatttaggggtt-tatgcatgacatgtggcaaa 89  Q
    |||||||||| |||||||| | |||| ||||||||||||||||| ||  ||||| |||||||||||||    
T  54316124 gggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgtggcaaa 54316057  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 4404142 - 4404097
Alignment:
Q  25 gtatgctcaatttaggcaatgctcaatttactccatttaggggttt 70  Q
    ||||||||||||||||  |||||| |||||||||||||| ||||||    
T  4404142 gtatgctcaatttaggtgatgctccatttactccatttaagggttt 4404097  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 4402042 - 4402117
Alignment:
Q  25 gtatgctcaatttaggcaatgctcaatttactccatttaggggttt--atgcatgacatgtggcaaacaaacatcc 98  Q
    |||||||  ||||||| ||||||| ||||| |||||||||| ||||  ||| | ||||||||||||| ||||||||    
T  4402042 gtatgcttcatttaggtaatgctctatttaatccatttaggagtttggatgtaagacatgtggcaaataaacatcc 4402117  T

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Target: chr8 (Bit Score: 123; Significance: 6e-63; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 172 - 387
Target Start/End: Original strand, 9134409 - 9134622
Alignment:
Q  172 aacacaccgcttccttttcccgtttcaccaccaccatctttccttctccgtcgccgctacccttttcaccaccgtcctcttttcctctccgtcgttgcct 271  Q
    |||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||   |     
T  9134409 aacacatcgcttccttttccggtttcaccaccgtcatctttccttctccgtcgccgctacccttttcaccaccgtcctcttcccctctccgtcgt---cg 9134505  T
Q  272 ccgcccttttcaccatcgtcctctttttctctctctgacgcagttcccttccaccaccgccttcaattttg-cattcttacatctgttgtaatatttcag 370  Q
    ||||||||||||||| ||||||||||| ||||||||||||||  | |||||||  |||||||||||||||| |||||||||||||||  |||||||||||    
T  9134506 ccgcccttttcaccaccgtcctcttttcctctctctgacgcaactaccttccatgaccgccttcaattttgccattcttacatctgtcataatatttcag 9134605  T
Q  371 caggttctatctaaaat 387  Q
    ||||||| |||| ||||    
T  9134606 caggttcaatctcaaat 9134622  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 9133903 - 9133993
Alignment:
Q  20 tttgggtatgctcaatttaggcaatgctcaatttactccatttaggggttt--atgcatgacatgtggcaaacaaacatcctaaggctgag 108  Q
    ||||||||||||| ||||||| || |||||||||||||||||||||| |||  |||||||||||||||||||||||||||| ||| |||||    
T  9133903 tttgggtatgctctatttaggtaaagctcaatttactccatttagggatttggatgcatgacatgtggcaaacaaacatccaaagactgag 9133993  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 9134252 - 9134342
Alignment:
Q  20 tttgggtatgctcaatttaggcaatgctcaatttactccatttaggggttt--atgcatgacatgtggcaaacaaacatcctaaggctgag 108  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| | |  |||||||||||||||||||||||||||| ||| |||||    
T  9134252 tttgggtatgctccatttaggtaatgctcaatttactccatttagggatatggatgcatgacatgtggcaaacaaacatccaaagactgag 9134342  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 493
Target Start/End: Original strand, 9134621 - 9134699
Alignment:
Q  415 attcatcaacctttatttgattttcaccttcattagagtagtgtttggattttgtatttgcgcaatggttcttcaatta 493  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||  | ||| |||||||||||    
T  9134621 attcatcaacctttatttgattttcacctcaattagagtagtgtttggattttgtatttgatcgatgcttcttcaatta 9134699  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 14999180 - 14999243
Alignment:
Q  26 tatgctcaatttaggcaatgctcaatttactccatttaggggtt-tatgcatgacatgtggcaa 88  Q
    ||||||| |||||||| | |||||||||||||||||||||| ||  ||||| ||||||||||||    
T  14999180 tatgctccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgtggcaa 14999243  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 22748594 - 22748634
Alignment:
Q  23 gggtatgctcaatttaggcaatgctcaatttactccattta 63  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  22748594 gggtatgctcaatttaggctatgctccatttactccattta 22748634  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 4371460 - 4371527
Alignment:
Q  23 gggtatgctcaatttaggcaatgctcaatttactccatttaggggtt-tatgcatgacatgtggcaaa 89  Q
    |||||||||| |||||||| | |||| ||||||||||||||||| ||  ||||| |||||||||||||    
T  4371460 gggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaa 4371527  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 21265569 - 21265636
Alignment:
Q  23 gggtatgctcaatttaggcaatgctcaatttactccatttaggggtt-tatgcatgacatgtggcaaa 89  Q
    |||||||||| |||||| | | |||||||||||||||||||||| ||  ||||| |||||||||||||    
T  21265569 gggtatgctccatttagactaagctcaatttactccatttagggtttggatgcaagacatgtggcaaa 21265636  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 22563216 - 22563283
Alignment:
Q  23 gggtatgctcaatttaggcaatgctcaatttactccatttaggggtt-tatgcatgacatgtggcaaa 89  Q
    |||||||||| |||||||| | |||| ||||||||||||||||| ||  ||||| |||||||||||||    
T  22563216 gggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaa 22563283  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 38418482 - 38418560
Alignment:
Q  20 tttgggtatgctcaatttaggcaatgctcaatttactccatttaggggttt--atgcatgacatgtggcaaacaaacat 96  Q
    ||||||||||||| |||||||  |||||| ||||||||| || || | |||  ||||| ||||||||||||||||||||    
T  38418482 tttgggtatgctccatttaggtgatgctccatttactccgttgagagatttagatgcaagacatgtggcaaacaaacat 38418560  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 17200084 - 17200126
Alignment:
Q  23 gggtatgctcaatttaggcaatgctcaatttactccatttagg 65  Q
    |||||||||| |||||||||| |||| ||||||||||||||||    
T  17200084 gggtatgctccatttaggcaaagctccatttactccatttagg 17200126  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 31193971 - 31194047
Alignment:
Q  23 gggtatgctcaatttaggcaatgctcaatttactccatttaggggtt-tatgcatgacatgtggcaaacaaacatcc 98  Q
    |||||||||| |||||||| | |||| |||||||||||||| || ||  ||||| ||||||||||||| ||| ||||    
T  31193971 gggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatcc 31194047  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 31194260 - 31194184
Alignment:
Q  23 gggtatgctcaatttaggcaatgctcaatttactccatttaggggtt-tatgcatgacatgtggcaaacaaacatcc 98  Q
    |||||||||| |||||||| | |||| |||||||||||||| || ||  ||||| ||||||||||||| ||| ||||    
T  31194260 gggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatcc 31194184  T

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