View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_35 (Length: 501)
Name: NF20633_high_35
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 483
Target Start/End: Complemental strand, 37429515 - 37429047
Alignment:
| Q |
16 |
aggggatggatgaaaagaaatttgttttgaggcctgttcctcatttgtggcaggagactttttagcagctcat-ctgcttcacttgcttgtgatggtgga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |
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| T |
37429515 |
aggggatggatgaaaagaaatttgttttgaggcctgttcctcatttgtggcaggagactttgtagcagctctttctgcttcacttgcttgtgatggtgga |
37429416 |
T |
|
| Q |
115 |
attcttttctgctcgtagagttccaacatttgatagctaacttctgcaagagaataaccataaggactcagcagactatacaaaaatacagtcgttgttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37429415 |
attcttttctgctcgtagagttccaacatttgatagctaacttctgcaagagaataaccataaggactcagcagactatacaaaaatacagtcgttgttt |
37429316 |
T |
|
| Q |
215 |
aacagcaaactaccatggaataaaagtgggctttgttctctaataaagatgtctaactcaatcagaaaatggggataaaacaatccagacatgtgacagt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37429315 |
aacagcaaactaccatggaataaaagtgggctttgttctctaataaagatgtctaactcaatcagataatggggataaaacaatccagacatgtgacagt |
37429216 |
T |
|
| Q |
315 |
agcagaaaatattataatgcattgagccatcacaagacagaagactaggcaaattggatcaatttgcttagcatgcaaataaattgagaggatggcacca |
414 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37429215 |
agcagaaattattataatgcattgagccatcacaagacagaagactaggcaaattggatcaattttcttagcatgcaaataaattgagaggatggcacca |
37429116 |
T |
|
| Q |
415 |
accctccaattggcatttggtaagatcgtactgttgccaccagtccttctcaccatctgacggaagatt |
483 |
Q |
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| T |
37429115 |
accctccaattggcatttggtaagatcatactgttgccaccagtccttctcaccatctgacggaagatt |
37429047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 426
Target Start/End: Original strand, 37435890 - 37436055
Alignment:
| Q |
263 |
atgtctaactcaatcagaaaatggggataaaacaatccagacatgtgacagtagcagaaaatattataatgcattgagccatcacaagacagaagactag |
362 |
Q |
| |
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|||||||||||||||||| | || |||||||||||| ||||||||| ||| ||||||||| || ||||||| ||| ||| || || |||||| |||| |
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| T |
37435890 |
atgtctaactcaatcagata-tgtggataaaacaattcagacatgtaacactagcagaaattaatataatgtatttagcgatgggaacacagaaaactat |
37435988 |
T |
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| Q |
363 |
gcaaattggatcaatttgcttagcatgcaaataaattgagaggatg---gcaccaaccctccaattg |
426 |
Q |
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||||||||||||| || |||||||||||||| ||||||| ||||| ||||||||||||||||| |
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| T |
37435989 |
ccaaattggatcaaatttcttagcatgcaaatgaattgaggggatgacaacaccaaccctccaattg |
37436055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 37435702 - 37435813
Alignment:
| Q |
88 |
tctgcttcacttgcttgtgatggtggaattcttttctgctcgtagagttccaacatttgatagctaacttctgcaagagaataaccataaggactcagca |
187 |
Q |
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|||||||||||| |||||||| ||||||| | ||| ||| |||| ||||| || ||||| || || ||||||||||||||||| ||||| |||||| | |
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| T |
37435702 |
tctgcttcacttccttgtgatagtggaatgccaatctcctcatagaattccagcagttgattgcaaatttctgcaagagaataacaataagaactcagaa |
37435801 |
T |
|
| Q |
188 |
gactatacaaaa |
199 |
Q |
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| ||||||||| |
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| T |
37435802 |
gggtatacaaaa |
37435813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 32506039 - 32505928
Alignment:
| Q |
88 |
tctgcttcacttgcttgtgatggtggaattcttttctgctcgtagagttccaacatttgatagctaacttctgcaagagaataaccataaggactcagca |
187 |
Q |
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|||||||||||| |||||||| |||||||||| |||||||| || |||||||||||||||| ||||||||||||||||||| ||| |||||||||| | |
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| T |
32506039 |
tctgcttcacttccttgtgattgtggaattctattctgctcataaagttccaacatttgattgctaacttctgcaagagaaaaacaccaaggactcagaa |
32505940 |
T |
|
| Q |
188 |
gactatacaaaa |
199 |
Q |
| |
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| ||||||||| |
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| T |
32505939 |
ggatatacaaaa |
32505928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 480
Target Start/End: Complemental strand, 32505727 - 32505613
Alignment:
| Q |
366 |
aattggatcaatttgcttagcatgcaaataaattgagaggatggcaccaaccctccaattggcatttggtaagatcgtactgttgccaccagtccttctc |
465 |
Q |
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|||||||| || || ||||| |||||||| ||||||| ||||||||||||||||||||||| | | ||| | ||| ||| |||||||| ||||||| |
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| T |
32505727 |
aattggattaactttcttagtatgcaaatgaattgaggggatggcaccaaccctccaattgacgtggggtgacatcaaactcctgccaccaaaccttctc |
32505628 |
T |
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| Q |
466 |
accatctgacggaag |
480 |
Q |
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||||||||||||||| |
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| T |
32505627 |
accatctgacggaag |
32505613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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