View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_41 (Length: 481)
Name: NF20633_high_41
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 53615279 - 53615712
Alignment:
| Q |
16 |
gtattgacacatgtaaaaggtgtaaggtttcaaaacttgtttttctaaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaa |
115 |
Q |
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| T |
53615279 |
gtattgacacatgtaaaaggtgtaaggtttcaaaacttgtttttctaaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaa |
53615378 |
T |
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| Q |
116 |
ctcccttgttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaa |
215 |
Q |
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| T |
53615379 |
ctcccttgttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaa |
53615478 |
T |
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| Q |
216 |
aattttcagaattgaagtattataattgtaagtacacaacatttgaacaacaaagagattgttgatatgattctcactattttgtccaatagttgacctc |
315 |
Q |
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| T |
53615479 |
aattttcagaattgaagtattataattgtaagtacacaacatttgaacaacaaagagattgttgatatgattctcactattttgtccaatagttgacctc |
53615578 |
T |
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| Q |
316 |
ctgatacatattccatcacaatgtatatttttgtttttgtgccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagg |
415 |
Q |
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| T |
53615579 |
ctgatacatattccatcacaatgtatatttttgtttttgtgccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagg |
53615678 |
T |
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| Q |
416 |
gattgtgaatcttcaagactcacaagaattccaa |
449 |
Q |
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| T |
53615679 |
gattgtgaatcttcaagactcacaagaattccaa |
53615712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 481
Target Start/End: Complemental strand, 53615757 - 53615721
Alignment:
| Q |
445 |
tccaaatatagttagaattcatgaggtatattatacc |
481 |
Q |
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| T |
53615757 |
tccaaatatagttagaattcatgaggtatattatacc |
53615721 |
T |
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