View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_45 (Length: 471)
Name: NF20633_high_45
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_45 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 3777921 - 3777657
Alignment:
| Q |
3 |
taagccacgcttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgtt |
102 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3777921 |
taagccacatttcaaccggtggatttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccattgtt |
3777822 |
T |
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| Q |
103 |
ttccgaacaaagaatgaatgctattttgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgct |
202 |
Q |
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||| || ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3777821 |
ttcagagcaaagaatgaatgctatgttgttagagggactcggagttggtttgaaggtaagatttaatgagattggcatagctgaaagagatgaaattgct |
3777722 |
T |
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| Q |
203 |
aaggtgattagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaagatct |
267 |
Q |
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| T |
3777721 |
aaggtgattagagatctaatgataggtgaagaacgaagtgagattcgacaaagaattgaagatct |
3777657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 3701183 - 3701438
Alignment:
| Q |
12 |
cttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaaca |
111 |
Q |
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| T |
3701183 |
cttcaaccggtggatttttaacacattgtggttggaattcgacacttgagagtatcgtgttaggagtgccaatgataacatggccattatttggcgagca |
3701282 |
T |
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| Q |
112 |
aagaatgaatgctattttgct---agagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtg |
208 |
Q |
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| T |
3701283 |
aagaatgaatgctgttttgttgacagagggactcaaagtgggtttgaagatcaaatttaatgagaatggcattgcagaaagagtggaaattgctaaggtg |
3701382 |
T |
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| Q |
209 |
attagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
264 |
Q |
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||| |||||||||| | || ||||||||||||||||||||||||||||| ||||| |
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| T |
3701383 |
gttaaagatctaatgctcggagaagaacgaagtgagattcgacaaagaattgaaga |
3701438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 3707951 - 3708205
Alignment:
| Q |
13 |
ttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaacaa |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||||||||||||||| || ||| |
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| T |
3707951 |
ttcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccattgtttggtgatcaa |
3708050 |
T |
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| Q |
113 |
agaatgaatgctattt---tgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtga |
209 |
Q |
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| T |
3708051 |
ataatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatggcattgcagaaagagaggaaattgctaaggtgg |
3708150 |
T |
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| Q |
210 |
ttagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
264 |
Q |
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||||| |||||||| | || |||||||| |||||||||||||||||||| ||||| |
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| T |
3708151 |
ttagacatctaatgctcggagaagaacggagtgagattcgacaaagaattgaaga |
3708205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 3719459 - 3719714
Alignment:
| Q |
12 |
cttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaaca |
111 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||||||||||||||| || || |
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| T |
3719459 |
cttcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccattgtttggtgatca |
3719558 |
T |
|
| Q |
112 |
aagaatgaatgctattt---tgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtg |
208 |
Q |
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||||||||||||||||| | |||||||||| ||| ||||||||| ||| ||||||||||||||| || || |||||||| ||||||||||||||| |
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| T |
3719559 |
aagaatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatggaattgcagaaagagaggaaattgctaaggtg |
3719658 |
T |
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| Q |
209 |
attagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
264 |
Q |
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||| ||||||||| | || ||| |||| |||||||||||||||||||||||||| |
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| T |
3719659 |
gttaaggatctaatgctcggagaaaaacggagtgagattcgacaaagaatggaaga |
3719714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 3770244 - 3769990
Alignment:
| Q |
13 |
ttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaacaa |
112 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| || ||||||||||||||||| || ||| |
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| T |
3770244 |
ttcaacaggtggatttttaacacattgtggttggaattcaacacttgagagtattgtgtcgggagtgccaatggtaacttggccattgtttggtgatcaa |
3770145 |
T |
|
| Q |
113 |
agaatgaatgctattt---tgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtga |
209 |
Q |
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|||||||||||||||| | |||||||||| ||| ||||||||| ||| |||||||||||||| ||| || |||||||| ||||||||||||||| |
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| T |
3770144 |
agaatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatgacattgcagaaagagaggaaattgctaaggtgg |
3770045 |
T |
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| Q |
210 |
ttagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
264 |
Q |
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||| |||||||||| | || |||||||| |||||||||||||||||||| ||||| |
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| T |
3770044 |
ttaaagatctaatgctcggagaagaacggagtgagattcgacaaagaattgaaga |
3769990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 3 - 264
Target Start/End: Complemental strand, 33005166 - 33004902
Alignment:
| Q |
3 |
taagccacgcttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgtt |
102 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||| || ||||||||| ||||||||||||| ||||| |
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| T |
33005166 |
taagccacacttcaactggtggatttttaacacattgtggttggaattcaacactcgagagcattgcgtcgggagtgccaatgataacttggccgttgtt |
33005067 |
T |
|
| Q |
103 |
ttccgaacaaagaatgaatgctattttg---ctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaaga-gatgaaat |
198 |
Q |
| |
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| ||| |||||| |||||||||||||| ||||||||||| || ||||||||||||| | ||||||||| |||||| || |||||| || ||||| |
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| T |
33005066 |
tggcgagcaaagattgaatgctattttgttaatagagggactcaaggtgggtttgaaggtaa-aattaatgagagtggcattgcagaaagaggaggaaat |
33004968 |
T |
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| Q |
199 |
tgctaaggtgattagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
264 |
Q |
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||||||||||||||||||| ||||| | ||||||||| | ||||| ||| ||||||||| ||||| |
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| T |
33004967 |
tgctaaggtgattagagatttaatgcttggtgaagaaaggagtgaaattgaacaaagaattgaaga |
33004902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 396 - 452
Target Start/End: Complemental strand, 3769760 - 3769704
Alignment:
| Q |
396 |
ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttgatttgttt |
452 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3769760 |
ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttggtttgttt |
3769704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 452
Target Start/End: Complemental strand, 3777536 - 3777448
Alignment:
| Q |
367 |
ctgtgagtttatttcaatgtgtttaatac---ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttgatttgttt |
452 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||| ||||| | ||||| || | |||||||||| |||||| ||||||| |
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| T |
3777536 |
ctgtgagtttatttcaatgtgtttattacattttttttcttccttaatgttgatgttgcaccacaatgatacttgaagttggtttgttt |
3777448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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