View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_5 (Length: 780)
Name: NF20633_high_5
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 612; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 11 - 765
Target Start/End: Original strand, 43222230 - 43222987
Alignment:
| Q |
11 |
cacagacaattttagtactgattaaggaattcgctcacctgatcataatttagaacttcttctgattgatgatcaacagctgcaagtgtgcctacaggtt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222230 |
cacagacaattttagtactgattaaggaattcgctcacctgatcataatttagaacttcttctgattgatgatcaacagctgcaagtgtgcctacaggtt |
43222329 |
T |
|
| Q |
111 |
tgccattgaaatagactagagacttcctgagagattcccaggcatcagcaagcattggctgaggctcgaacgagttctgagcagatgaaagtgatcttgc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43222330 |
tgccattgaaatagactagagacttcctgagagattcccaggcatcagcaagcattggctgaggctcgaacgagttctgagcagatgaaaatgatcttgc |
43222429 |
T |
|
| Q |
211 |
tccaatggacagttcactgagtaaactgtcatcaactgatctctgtctctctatgtttagccttggattgtcaagcaagccagagagatcaaaagcatcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222430 |
tccaatggacagttcactgagtaaactgtcatcaactgatctctgtctctctatgtttagccttggattgtcaagcaagccagagagatcaaaagcatcc |
43222529 |
T |
|
| Q |
311 |
atctcggagagcaaacactgagacctgattttcctaattcccacaggcccgttcattccagagatcgaacactgagacttgattttcctcattcccacaa |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222530 |
atctcggagagcaaacactgagacctgattttcctaattcccacaggcccgttcattccagagatcgaacactgagacttgattttcctcattcccacaa |
43222629 |
T |
|
| Q |
411 |
gcccgttcatttctccgataatcgaatgcctttatcagaaatagatgttacctacaatcagaagcaaacattttacaaacaagcnnnnnnnnnnnnnnnn |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43222630 |
gcccgttcatttctccgataatcgaatgcctttatcagaaatagatgttacctacaatcagaagcaaacattttacaaacaaccaaaaaataaaataaaa |
43222729 |
T |
|
| Q |
511 |
nnnnnnnnccagtgatggcattggaaacgtaaaacacatacatggtggtca----cacatgctagcagctnnnnnnntaccaaggtaaaggaacaatagt |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
43222730 |
aataaaaaccagtgatggcattggaaacgtaaaacacatacatggtggtcattctcacatgctagcagctaaaaaaataccaaggtaaaggaacaatagt |
43222829 |
T |
|
| Q |
607 |
ttatgatctcatagctcatgggagaagcgtaatgttgtcccaataattttcaatagtaagtgagacctaaagtaagttttaccgtatgcagtcnnnnnnn |
706 |
Q |
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| T |
43222830 |
ttatgatctcatagctcatgggagaagcgtaatgttgtcccaataattttcaatagtaagtgagacctaaagtaagttttaccgtatgcagtcttttttt |
43222929 |
T |
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| Q |
707 |
gtccgcatataatgtcttttttcttataaaacttaatgaaaaatatcttttgttggtag |
765 |
Q |
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| T |
43222930 |
gtccgcatataatgtc-tttttcttataaaacttaatgaaaaatatcttttgttggtag |
43222987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 43232654 - 43232831
Alignment:
| Q |
18 |
aattttagtactgattaaggaattcgctcacctgatcataatttagaacttcttctgattgatgatcaacagctgcaagtgtgcctacaggtttgccatt |
117 |
Q |
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||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| |||||||||||||||||||| |||||| |||||| || | |
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| T |
43232654 |
aattttagtactgattaagaaattc----acctgatcgtaatttagaacttcctctgcttgatgatcaacagctgcaattgtgccaacaggtgcacctct |
43232749 |
T |
|
| Q |
118 |
gaaatagactagagacttcctgagagattcccaggcatcagcaagcattggctgaggctcgaacgagttctgagcagatgaa |
199 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||| |||||| || ||||| |||||||| ||||||||||| |
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| T |
43232750 |
gaaatggactagagatttcctgagagattcccaggcatcagcaaccattggatgcggctcaaacgagttgcgagcagatgaa |
43232831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 43232931 - 43233045
Alignment:
| Q |
239 |
tcatcaactgatctctgtctctctatgtttagccttggattgtcaagcaagccagagagatcaaaagcatccatctcggagagcaaacactgagacctga |
338 |
Q |
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||||||| ||||||||||||||||||||||||||| || |||||||||| | || |||||| ||| |||||||||| | | | |||||||||| | || |
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| T |
43232931 |
tcatcaaatgatctctgtctctctatgtttagcctcggcctgtcaagcaaacgagtgagatcgaaatcatccatctcagccatcgaacactgagagccga |
43233030 |
T |
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| Q |
339 |
ttttcctaattccca |
353 |
Q |
| |
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|||||||||||||| |
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| T |
43233031 |
ctttcctaattccca |
43233045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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