View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_53 (Length: 436)
Name: NF20633_high_53
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 36255593 - 36255161
Alignment:
| Q |
1 |
aagagttcagattgctcagaattggctgacgagttgaatcacctccacagaaccagaagaattttaattagcatcttaacatatcatttaatcacatgac |
100 |
Q |
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||||||||||||||||||||||| ||||| | |||||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36255593 |
aagagttcagattgctcagaatttgctgatgctttgaatcacctccacatatccataagaattttaattaccatcttaacatatcatttaatcacatgac |
36255494 |
T |
|
| Q |
101 |
atgactactattattaaaaggaaa------------aatgatgctgtgtgacctttgtcttgctgatagttcaacctcaagcacaaatcctaaatttttc |
188 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36255493 |
atgactactattattaaaaggaaaggagaacttttaaatgatgctgtgtgacctttgtcttgctgatagttcaacctcaagcacaaatcctaaatttttc |
36255394 |
T |
|
| Q |
189 |
acattttccatttctacacctatgagacttttacacctctatttcccttttctaacatattactcatcatactccttactttttctcttatttctctctt |
288 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36255393 |
acattttccatttctacacctatgagacttatacacctctatttcccttttctaacatattactcatcatactccttactttttctcttatttctctctt |
36255294 |
T |
|
| Q |
289 |
tcttacgcatttcactaacaaagactatttatcccagcacaaaatagttctacaggtgcaattcttttacttcaatgagtcaaaacttagtccgaatgaa |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36255293 |
tcttacgcatttcactaacaaagactatttatcccagcacaaaatagttctacaggtgcaattcttttacttcaatgagtcaaaacttagtccgaatgaa |
36255194 |
T |
|
| Q |
389 |
ctatgaaattatgacggaaactagtgacttttc |
421 |
Q |
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| T |
36255193 |
ctatgaaattatgacggaaactagtgacttttc |
36255161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 36262016 - 36261899
Alignment:
| Q |
283 |
tctctttcttacgcatttcactaacaaagac--tatttatcccagca-caaaatagttctacaggtgcaattcttttacttcaatgagtcaaaacttagt |
379 |
Q |
| |
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|||||||||||| || |||||||| || || |||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
36262016 |
tctctttcttacatatctcactaaccaaaacaatatttatcccagcaacagcatagttctacaggt-caa--cttttacttcaatgagtcaaaatttagt |
36261920 |
T |
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| Q |
380 |
ccgaatgaactatgaaattat |
400 |
Q |
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| || ||||||||||||||| |
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| T |
36261919 |
ctaaaagaactatgaaattat |
36261899 |
T |
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