View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_high_54 (Length: 436)
Name: NF20633_high_54
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_54 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 25)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 4574933 - 4575357
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
4574933 |
aaagatgtcaagtcattttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagggaacatagaatagaaagcattcataacat |
4575032 |
T |
|
| Q |
101 |
cactctcaagttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggatt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4575033 |
cactctcaagttcattagaagtattgaataccataccagaagctctatgacatttatctgccacttcagtattaaatcttatcgtcaagtcattaggatt |
4575132 |
T |
|
| Q |
201 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4575133 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactc |
4575232 |
T |
|
| Q |
301 |
tcatctgcatgtcataattgcaaaaatcaatagcaagtcatatgtataa--atatatatcatggtttacaatcacatttgcaa-aataattttggttgtg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
4575233 |
tcatctgcatgtcataattgcaaaaatcaatagcaagtcatatgtataaatatatatatcaaggtttaaaatcacatttgcaataataattttggttgtg |
4575332 |
T |
|
| Q |
398 |
ttatcctactgatattgcatataat |
422 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4575333 |
ttatcctactgatattgcatataat |
4575357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 4561129 - 4561554
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
4561129 |
aaagatgtcaagtgattttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagggaacatagaatagaaagcattcataacat |
4561228 |
T |
|
| Q |
101 |
cactctcaagttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggatt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4561229 |
cactctcaagttcattagaagtattgaataccataccagaagctctaagacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggatt |
4561328 |
T |
|
| Q |
201 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
4561329 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactc |
4561428 |
T |
|
| Q |
301 |
tcatctgcatgtcataattgcaaaaatcaatagc---aagtcatatgtataaatatatatcatggtttacaatcacatttgcaa-aataattttggttgt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||| |
|
|
| T |
4561429 |
tcatctgcatgtcataattgcaaaaatcaatagcttaaagtcatatgtataaatatatatcatggtttaaaatcacattaacaataataattttgcctgt |
4561528 |
T |
|
| Q |
397 |
gttatcctactgatattgcatataat |
422 |
Q |
| |
|
| |||| || |||||||||||||||| |
|
|
| T |
4561529 |
gctatcatattgatattgcatataat |
4561554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 15 - 377
Target Start/End: Original strand, 4470442 - 4470806
Alignment:
| Q |
15 |
attttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctcaagttca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||||||||| | |||||||||||| || | |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
4470442 |
attttgtggactttgatttaaaaaagaagaaagtggaccaatggcgtatagagaagggaatatagaatagagttcattcataacatcactttcaagttca |
4470541 |
T |
|
| Q |
115 |
ttcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggattttttgtctttatta |
214 |
Q |
| |
|
|| |||||||| || | ||| |||||||||| |||||||||| || ||||||| | || || ||| | | ||||||||||||| |||| |||||||| |
|
|
| T |
4470542 |
ttagaagtattcaaaacaatagcagaagctctttgacatttatttgtcacttcatttgtatattttaacataaagtcattaggatcttttatctttattg |
4470641 |
T |
|
| Q |
215 |
acctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtca |
314 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||| || |||| |||||| ||| | |||||| |||||||||||||| ||| |
|
|
| T |
4470642 |
tttcaggaaaatccttcaatctgaagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatca |
4470741 |
T |
|
| Q |
315 |
taattgcaaaaatcaatagc--aagtcatatgtataaatatatatcatggtttacaatcacattt |
377 |
Q |
| |
|
|||||| |||| |||||||| |||| |||| ||||||||||| || |||||| |||||||||| |
|
|
| T |
4470742 |
taattgaaaaagtcaatagctgaagttatatacataaatatataccaaggtttaaaatcacattt |
4470806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 3172366 - 3172684
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacat |
100 |
Q |
| |
|
||||||| ||||| |||||| ||||||||| ||| ||| ||||| || ||||||||||||||||||||||| || | |||| | || ||||||||||| |
|
|
| T |
3172366 |
aaagatgccaagtgattttgcggactttgacttaaaaacgaagcgaacggaccaattgtgtatagagaagggaatatagaactaagagtattcataacat |
3172465 |
T |
|
| Q |
101 |
cactctcaagttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggatt |
200 |
Q |
| |
|
|||||||||||||||| ||||| ||||| | ||| |||||||| | |||||||||||| | |||||| | ||||| |||| |||| |||||||||| |
|
|
| T |
3172466 |
cactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtgacatttatctcctacttcaatcataaattctatcatcaaatcattaggatc |
3172565 |
T |
|
| Q |
201 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactc |
300 |
Q |
| |
|
|||| || | ||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||| | | |||||||||||| |||||||| || |||| |
|
|
| T |
3172566 |
ttttatcctaattaaagtaggaagatgcttcaatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactc |
3172665 |
T |
|
| Q |
301 |
tcatctgcatgtcataatt |
319 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
3172666 |
tcatctgcatatcataatt |
3172684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 4461748 - 4462131
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacat |
100 |
Q |
| |
|
||||||| || || |||||||||||||||||||| |||||||| | ||||||||| |||||||||||||| || | | |||||| ||||||||| || |
|
|
| T |
4461748 |
aaagatgccaggtgattttgtggactttgatttataaaagaagaaagtggaccaatggtgtatagagaagggaatataaaatagagttcattcataatat |
4461847 |
T |
|
| Q |
101 |
cactctcaagttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggatt |
200 |
Q |
| |
|
|||| || |||||||| |||||||| || | | | |||||||||| ||||||||||||| || |||| || |||| ||||| ||||| |||||||| |
|
|
| T |
4461848 |
cactttcgagttcattagaagtattcaaaataacagcagaagctctgtgacatttatctgtcatttcactgacaaattttatcagcaagttattaggatc |
4461947 |
T |
|
| Q |
201 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactc |
300 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||| || ||||| |||||| ||| |||||||| | || |
|
|
| T |
4461948 |
ttttatctttattgtttcaggaaaatccttcaatctgaaatttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatc |
4462047 |
T |
|
| Q |
301 |
tcatctgcatgtcataattgcaaaaatcaatagc---aagtcatatgtataaatatatatcatggtttacaatcacatttgcaa |
381 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||| |||| |||| |||||||||||||| ||| || |||||||||||||| |
|
|
| T |
4462048 |
tcatctgcatatcataattaaaaaagtcaatagcttgaagttatatacataaatatatatcaaggtataaaatcacatttgcaa |
4462131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 9 - 334
Target Start/End: Original strand, 4481326 - 4481651
Alignment:
| Q |
9 |
caagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctca |
108 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| || | |||||||| || ||||||||||||||||||| |
|
|
| T |
4481326 |
caagtgatattgtggactttgatttaaaaaagaagccaatggaccaatggtgtatagagaagggaatatagaatagagagaattcataacatcactctca |
4481425 |
T |
|
| Q |
109 |
agttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggattttttgtct |
208 |
Q |
| |
|
||||||| |||||||||| | | | |||| ||||| ||||||||||||| ||||||| | ||| || |||| |||||| |||||||| | || || |
|
|
| T |
4481426 |
agttcataagaagtattgataacaaaagcagatgctctttgacatttatctgtcacttcatttttatattttatgatcaagtgattaggatctgttacct |
4481525 |
T |
|
| Q |
209 |
ttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgc |
308 |
Q |
| |
|
| ||||| |||||| ||||||||||| ||||||||||||||||| |||||||| | | ||| |||||||||| ||| ||||| || |||||||||||| |
|
|
| T |
4481526 |
taattaaatcaggaaggtccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgc |
4481625 |
T |
|
| Q |
309 |
atgtcataattgcaaaaatcaatagc |
334 |
Q |
| |
|
|| ||| ||| ||||| |||||||| |
|
|
| T |
4481626 |
atatcacaatcacaaaattcaatagc |
4481651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4458220 - 4458547
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacat |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||| ||||| ||||| ||||||| |||||| |||| ||| |||| || ||||||||||| |
|
|
| T |
4458220 |
aaagatgccaagtgattttgtggactttgatttataaaagaagcaaatgggccaatggtgtatatagaagggaacatagagtagagagtattcataacat |
4458319 |
T |
|
| Q |
101 |
cactctcaagttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggatt |
200 |
Q |
| |
|
||||||||||||||| |||||||||| | ||| ||| |||||||||||| ||||||||||||| || ||||| ||||| |||| | |||||||| |
|
|
| T |
4458320 |
cactctcaagttcataagaagtattgataacaatagaagaggctctatgacatctatctgccacttcggttataaattttatcatcaaattattaggatc |
4458419 |
T |
|
| Q |
201 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtca---atttttgtgtccaaatattcatttgttagatca |
297 |
Q |
| |
|
| | ||||||| || |||||| |||||||| || ||||||| |||||||| ||||||||| | |||| ||||||||||| ||||||||| || | |
|
|
| T |
4458420 |
tgtaatctttataaaatcaggaaggtccttcaacctaaagttttgcaaacctgaaatccagtcaccgacttttttgtccaaatatccatttgttaaataa |
4458519 |
T |
|
| Q |
298 |
ctctcatctgcatgtcataattgcaaaa |
325 |
Q |
| |
|
||||| ||||||| | ||||||||||| |
|
|
| T |
4458520 |
ctctcttctgcatattgtaattgcaaaa |
4458547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 4514620 - 4514294
Alignment:
| Q |
9 |
caagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctca |
108 |
Q |
| |
|
||||| |||||||||||||||||| | ||| ||||| ||||| ||||| |||||||||||||| | || |||||| | |||||||||||||||||||||| |
|
|
| T |
4514620 |
caagtgattttgtggactttgattcaaaaacgaagcaaatgggccaatggtgtatagagaagggagcatagaataaagagcattcataacatcactctca |
4514521 |
T |
|
| Q |
109 |
agttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggattttttgtct |
208 |
Q |
| |
|
|| ||||| |||||||| || | ||| |||||||||||||| | ||||| ||| |||| | ||||| || | |||| ||||||| || | ||||| |
|
|
| T |
4514520 |
agatcattagaagtatttaaaaaaatagcagaagctctatgaagtctatctaccatttcaaagataaattctaacatcaaatcattagcatctgttgtcc |
4514421 |
T |
|
| Q |
209 |
ttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgc |
308 |
Q |
| |
|
||| || |||||| ||||||| ||| |||||| ||||||||| |||||||||| ||| |||||||||||| ||||||| | || |||||||||||| |
|
|
| T |
4514420 |
gtataaaatcaggaaggtccttcagtctaaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgc |
4514321 |
T |
|
| Q |
309 |
atgtcataattgcaaaaatcaatagca |
335 |
Q |
| |
|
|| |||||||||||||| | ||||||| |
|
|
| T |
4514320 |
atatcataattgcaaaagtaaatagca |
4514294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 4506496 - 4506806
Alignment:
| Q |
15 |
attttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctcaagttca |
114 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||| || ||||| ||||||||||||||||||| | || | |||||||| ||||| ||||||||||||| |
|
|
| T |
4506496 |
attttgtggactttgatttacaaatgaagttaaagggccaatagtgtatagagaaggaaacataatatcaagagcattcagaacattactctcaagttca |
4506595 |
T |
|
| Q |
115 |
ttcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggattttttgtctttatta |
214 |
Q |
| |
|
|| |||||||||| | ||| ||| ||||||||| || | ||||| ||||| | ||||| |||| |||| || ||||||| | ||||| |||| | |
|
|
| T |
4506596 |
ttagaagtattgagaacaatagaagaggctctatgaaatgtttctgctgcttcaataataaattctatcctcaaatcgttaggatctgttgtccttataa |
4506695 |
T |
|
| Q |
215 |
acctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtca |
314 |
Q |
| |
|
| ||||||||| |||| ||| |||||| |||||||||| |||||||| | || |||||||||||| |||||||||||| |||||||||||||| ||| |
|
|
| T |
4506696 |
aatcaggaagatctttcagtctaaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatca |
4506795 |
T |
|
| Q |
315 |
taattgcaaaa |
325 |
Q |
| |
|
||||| ||||| |
|
|
| T |
4506796 |
taattacaaaa |
4506806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 4266673 - 4266346
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacat |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||| ||||| ||||| ||||||| |||||| |||| ||| |||| |||||||||||||| |
|
|
| T |
4266673 |
aaagatgccaagtgattttgtggactttgatttaaaaaagaagcaaatgggccaatggtgtatatagaagggaacatagagtagagagcattcataacat |
4266574 |
T |
|
| Q |
101 |
cactctcaagttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggatt |
200 |
Q |
| |
|
||||||||||||||| |||||||||| | ||| ||| |||| |||||| |||| |||||||| || ||||| ||||| |||| |||||||||| |
|
|
| T |
4266573 |
cactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccgccacttcggtaataaattttatcatcaaatcattaggatc |
4266474 |
T |
|
| Q |
201 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagt---caatttttgtgtccaaatattcatttgttagatca |
297 |
Q |
| |
|
| | || || | || |||||| |||||||| || ||||||| ||||||| | ||||||| ||| ||| | || |||||| |||||||||||| | |
|
|
| T |
4266473 |
tgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaaccttgaatccagtcaccaactttattatctaaatatccatttgttagataa |
4266374 |
T |
|
| Q |
298 |
ctctcatctgcatgtcataattgcaaaa |
325 |
Q |
| |
|
||||||||||||| || |||||||||| |
|
|
| T |
4266373 |
ctctcatctgcatatcgcaattgcaaaa |
4266346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 4489862 - 4489484
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacat |
100 |
Q |
| |
|
|||||| |||||| ||||| |||| |||||| || |||||||| ||||| ||||||||||||| |||||| || | |||| | |||||| ||| ||| |
|
|
| T |
4489862 |
aaagatttcaagtgattttctggaatttgatctaaaaaagaagaaaatgggccaattgtgtatacagaagggaatatagaactaagagcattgatagcat |
4489763 |
T |
|
| Q |
101 |
cactctcaagttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggatt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || || |||| ||||||||||||| | ||||| | ||| || ||||| ||| ||||| |
|
|
| T |
4489762 |
cactctcaagttcattagaagtattgaaaataatggttgagcctctttgacatttatctgtctcttcaattttatattttatca------catcaggatc |
4489669 |
T |
|
| Q |
201 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactc |
300 |
Q |
| |
|
|||| || |||||| ||||| ||||||||| || | | ||||||||||||| ||||| |||| ||| |||||||||| | ||| |||||||| |||| |
|
|
| T |
4489668 |
ttttatccttattatatcaggaaaatccttcaaactaatgcttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactc |
4489569 |
T |
|
| Q |
301 |
tcatctgcatgtcataattgcaaaaatcaatagc---aagtcatatgtat-aaatatatatcatggtttacaatcacatttgcaa |
381 |
Q |
| |
|
|||||||||| ||| |||| ||||| |||||||| |||| |||| ||| |||||||||||| |||||| |||| | ||||||| |
|
|
| T |
4489568 |
tcatctgcatatcacaatttcaaaagtcaatagcttgaagttatatatataaaatatatatcaaggtttaaaatcgcctttgcaa |
4489484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4503904 - 4503834
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaagg |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4503904 |
aaagatgtcaagtcattttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagg |
4503834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 4299320 - 4299214
Alignment:
| Q |
9 |
caagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctca |
108 |
Q |
| |
|
||||| ||| |||||| ||||||||| || |||| ||| || ||||| || |||| |||||| |||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
4299320 |
caagtgattatgtggagtttgatttaataatgaaggtaaaggtccaatagtatataaagaagggaacatagaatagagagcattcattacatcactctca |
4299221 |
T |
|
| Q |
109 |
agttcat |
115 |
Q |
| |
|
||||||| |
|
|
| T |
4299220 |
agttcat |
4299214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 4503806 - 4503725
Alignment:
| Q |
87 |
agcattcataacatcactctcaagttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttca |
168 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| | || | || ||||| ||||||||||||||||||||| |
|
|
| T |
4503806 |
agcattcatagcatcactctcaagttcattagaagtattgaaaacaatggctgaggctctttgacatttatctgccacttca |
4503725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 4517191 - 4517263
Alignment:
| Q |
246 |
caaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcataat |
318 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||| ||||||| | || |||||||||||||| ||||||| |
|
|
| T |
4517191 |
caaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataat |
4517263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 4593096 - 4593168
Alignment:
| Q |
238 |
aagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcat |
310 |
Q |
| |
|
||||||||||||||||| ||||| || | ||| || ||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
4593096 |
aagtttttcaaacctggaatccaatctactttagtttccaaatatccatttgttagataactctcatctgcat |
4593168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 4602654 - 4602733
Alignment:
| Q |
238 |
aagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcataa |
317 |
Q |
| |
|
||||||||||||||||| ||||| || | |||||| |||||| || |||||||||||| ||| |||||||||| |||||| |
|
|
| T |
4602654 |
aagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
4602733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 4617887 - 4617966
Alignment:
| Q |
238 |
aagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcataa |
317 |
Q |
| |
|
|||||||||||||| || ||||| || | ||| || |||||| || |||||||||||| |||||||||||||| |||||| |
|
|
| T |
4617887 |
aagtttttcaaaccgggaatccaatctactttagtttccaaacatccatttgttagataactctcatctgcatatcataa |
4617966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 4592875 - 4592983
Alignment:
| Q |
17 |
tttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctcaagttcatt |
116 |
Q |
| |
|
|||||||| |||| |||| || |||| ||| || ||||| | ||| ||||||||||||| ||| ||| |||||| || |||||||||||||||||||| |
|
|
| T |
4592875 |
tttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcatt |
4592974 |
T |
|
| Q |
117 |
cgaagtatt |
125 |
Q |
| |
|
||||||| |
|
|
| T |
4592975 |
gaaagtatt |
4592983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 4503721 - 4503643
Alignment:
| Q |
256 |
atccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcataattgcaaaaatcaatagc |
334 |
Q |
| |
|
|||||||||| ||| ||||||||| | ||| |||||||| ||||||||||| || || |||||||||| |||||||| |
|
|
| T |
4503721 |
atccagtcaactttactgtccaaatttccatctgttagataactctcatctgtataacacaattgcaaaactcaatagc |
4503643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 4259388 - 4259328
Alignment:
| Q |
274 |
tccaaatattcatttgttagatcactctcatctgcatgtcataattgcaaaaatcaatagc |
334 |
Q |
| |
|
|||| |||| |||||||||||| |||| |||||| |||||||||| ||||| |||||||| |
|
|
| T |
4259388 |
tccagatatccatttgttagatagctcttatctgcttgtcataattacaaaagtcaatagc |
4259328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 4259643 - 4259547
Alignment:
| Q |
19 |
tgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctcaagttcat |
115 |
Q |
| |
|
|||||| ||||||||| || |||| ||| || ||||| | |||| |||||| |||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
4259643 |
tgtggagtttgatttaataatgaaggtaaaggtccaatagcatataaagaagggaacatagaatagagcacattcattacatcactctcaagttcat |
4259547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 4484110 - 4484022
Alignment:
| Q |
238 |
aagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttg-ttagatcactctcatctgcatgtcataattgcaaaa |
325 |
Q |
| |
|
|||||||||||| |||| | |||||| | || |||||||||||| |||||| |||||| ||||| || ||||| |||||||| ||||| |
|
|
| T |
4484110 |
aagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatcataattacaaaa |
4484022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 4564576 - 4564648
Alignment:
| Q |
238 |
aagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcat |
310 |
Q |
| |
|
||||||||||||||||| ||||| || | || || ||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
4564576 |
aagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctgatctgcat |
4564648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 4602477 - 4602541
Alignment:
| Q |
61 |
tatagagaaggaaacaaagaatagaaagcattcataacatcactctcaagttcattcgaagtatt |
125 |
Q |
| |
|
|||| |||||| |||| |||||| | |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4602477 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtatt |
4602541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 334
Target Start/End: Complemental strand, 20863342 - 20863017
Alignment:
| Q |
9 |
caagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctca |
108 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||| | || || ||||| |||||||||||||| |||| |||||||| | |||||||||||||||||||| |
|
|
| T |
20863342 |
caagtgattctgtggactttgatttaaaaaagaaacaaaagggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctca |
20863243 |
T |
|
| Q |
109 |
agttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggattttttgtct |
208 |
Q |
| |
|
|| ||||| |||||||||| | ||| |||| ||||| ||| || ||||| | |||||| || |||| |||| | | |||||||||||| ||||| |
|
|
| T |
20863242 |
agctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtcc |
20863143 |
T |
|
| Q |
209 |
ttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgc |
308 |
Q |
| |
|
|||| | || ||| ||||||| |||||| ||| ||||||||| |||| |||| ||| || ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
20863142 |
ttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctgt |
20863043 |
T |
|
| Q |
309 |
atgtcataattgcaaaaatcaatagc |
334 |
Q |
| |
|
|| |||||| | ||||| ||| |||| |
|
|
| T |
20863042 |
atatcataactccaaaagtcagtagc |
20863017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 1675079 - 1675169
Alignment:
| Q |
225 |
atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcat |
315 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||| || | |||||| ||||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
1675079 |
atccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttagatgtctctcatctgcatatcat |
1675169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 24103624 - 24103951
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacat |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||| ||||| ||||| ||||||| |||||| |||| ||| |||| |||||||||||||| |
|
|
| T |
24103624 |
aaagatgccaagtgattttgtggactttgatttaaaaaagaagcaaatgggccaatggtgtatatagaagggaacatagagtagagagcattcataacat |
24103723 |
T |
|
| Q |
101 |
cactctcaagttcattcgaagtattgaatagcataccagaagctctatgacatttatctgccacttcagtgttaaatcttatcgtcaagtcattaggatt |
200 |
Q |
| |
|
||||||||||||||| |||||||||| | ||| ||| ||||| |||||| | | |||||||| || ||||| ||||| |||| |||||||||| |
|
|
| T |
24103724 |
cactctcaagttcatatgaagtattgataacaatagaagaggctctgtgacatcttaccgccacttcggtaataaattttatcatcaaatcattaggatc |
24103823 |
T |
|
| Q |
201 |
ttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacctgggatccag---tcaatttttgtgtccaaatattcatttgttagatca |
297 |
Q |
| |
|
| | || || | || |||||| |||||||| || ||||| | ||||||||| |||| | ||| ||| |||| |||||| |||||||||||| | |
|
|
| T |
24103824 |
tgtaatccttgtaaaatcaggaaggtccttcaacctaaagttatgcaaacctggaatcctgccaccaactttattgtctaaatatccatttgttagataa |
24103923 |
T |
|
| Q |
298 |
ctctcatctgcatgtcataattgcaaaa |
325 |
Q |
| |
|
||||||||||||| | | |||||||||| |
|
|
| T |
24103924 |
ctctcatctgcatattacaattgcaaaa |
24103951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 1281966 - 1282050
Alignment:
| Q |
225 |
atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgca |
309 |
Q |
| |
|
||||||||| | ||| |||||||||||||| ||||| || | |||||| ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
1281966 |
atccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttccaaatatccatttgttagataactctcatctgca |
1282050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 316 - 406
Alignment:
| Q |
225 |
atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcat |
315 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||| || | |||||| ||||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
316 |
atccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttagatgtctctcatctgcatatcat |
406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 3087045 - 3087159
Alignment:
| Q |
1 |
aaagatgtcaagtcattttgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacat |
100 |
Q |
| |
|
||||||| ||||| ||| |||| | |||||||||| | |||| |||||| ||||| || |||| ||||| |||| |||||| | |||||||| |||| |
|
|
| T |
3087045 |
aaagatgccaagtgattatgtgaagtttgatttagtagtgaaggtaatggtccaatggtatataatgaagggaacacagaatatagcgcattcattacat |
3087144 |
T |
|
| Q |
101 |
cactctcaagttcat |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3087145 |
cactctcaagttcat |
3087159 |
T |
|
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Target: scaffold0477 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 4178 - 4082
Alignment:
| Q |
19 |
tgtggactttgatttagaaaagaagctaatggaccaattgtgtatagagaaggaaacaaagaatagaaagcattcataacatcactctcaagttcat |
115 |
Q |
| |
|
|||||| ||||||||| || |||| ||| || ||||| || |||| |||||| |||| |||||||| |||||||| ||| | ||||||||||||| |
|
|
| T |
4178 |
tgtggagtttgatttaataatgaagttaaaggtccaatggtatataaagaagggaacatagaatagagagcattcaatacaccgctctcaagttcat |
4082 |
T |
|
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