View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_high_58 (Length: 432)
Name: NF20633_high_58
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 46639365 - 46638960
Alignment:
| Q |
16 |
caatttaaagtcaggtaggagaaccatcagtacattctaaaccattttgttttcaaaggtcaaaaactccatgatgatgacagaggcatgtatcttaaaa |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46639365 |
caatttaaagtcaggtaggacaaccatcagtacattctaaaccattttgttttcaaaggtcaaaaactccatgatgatgacagaggcatgtatcttaaaa |
46639266 |
T |
|
| Q |
116 |
gaaaataactattgacttctactctttaacttaaccaattggcacaaatatctagctaacactaccatctccattgaaatgtttttcttcttgcgctaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46639265 |
gaaaataactattgacttctactctttaacttaaccaattggcacaaatatctagctaacactaccatctccattgaaatatttttcttcttgcgctaaa |
46639166 |
T |
|
| Q |
216 |
attgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
46639165 |
attgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcgacaaggattgaaaggatcttggtgtgtctggatgt |
46639066 |
T |
|
| Q |
316 |
ctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcgg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46639065 |
ctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcgg |
46638966 |
T |
|
| Q |
416 |
attcat |
421 |
Q |
| |
|
|||||| |
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|
| T |
46638965 |
attcat |
46638960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 221 - 421
Target Start/End: Complemental strand, 46620442 - 46620242
Alignment:
| Q |
221 |
agtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttc |
320 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46620442 |
agtcccatgatctgaacaacaacgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttc |
46620343 |
T |
|
| Q |
321 |
tttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattca |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46620342 |
tttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattca |
46620243 |
T |
|
| Q |
421 |
t |
421 |
Q |
| |
|
| |
|
|
| T |
46620242 |
t |
46620242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 46 - 418
Target Start/End: Complemental strand, 46631114 - 46630742
Alignment:
| Q |
46 |
tacattctaaaccattttgttttcaaaggtcaaaaactccatgatgatgacagag-gcatgtatcttaaaagaaaataactattgacttctactctttaa |
144 |
Q |
| |
|
||||||| |||||| ||||||| ||| |||| |||||||||||||| |||| ||| ||| ||||||| | | ||| |||||| |||||||||||| |
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|
| T |
46631114 |
tacattcaaaaccaatttgtttacaacagtcagaaactccatgatga---cagatagcaggtagcttaaaaaattacaacaattgacctctactctttaa |
46631018 |
T |
|
| Q |
145 |
cttaaccaattggca--caaatatctagctaacactaccatctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaa |
242 |
Q |
| |
|
||||||||| | | ||||||| |||||| | ||||| ||||||| ||||| |||||||| | ||||||| || ||| ||||||||||||||| | |
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|
| T |
46631017 |
cttaaccaagtaacttgcaaatatgtagctacctttaccacctccattcaaatgcttttcttcctatgctaaaactgcagtaccatgatctgaacaatga |
46630918 |
T |
|
| Q |
243 |
taatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacat |
342 |
Q |
| |
|
| |||||||| ||||||||| | ||| | |||||| ||||||||||| | ||||||| || |||||||| |||||| |||| || ||||||||||||| |
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|
| T |
46630917 |
cgaggcagcattgttttgcctcttttacaatccttgcagcaaggattgagatgatcttgttgcgtctggatgtctttccttttttgcctctttggcacat |
46630818 |
T |
|
| Q |
343 |
gcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggatt |
418 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||| || || ||||| || ||| |||||||||||||||||| |
|
|
| T |
46630817 |
gcaagaattcatttgctatatattccaatgctctaactgtcaatggtctttttctattgctctgtctcctcggatt |
46630742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 123 - 418
Target Start/End: Original strand, 46172741 - 46173041
Alignment:
| Q |
123 |
actattgacttctactctttaacttaaccaattggca--caaatatctagctaacactac---catctccattgaaatgtttttcttcttgcgctaaaat |
217 |
Q |
| |
|
|||||||| |||| |||||||||||||||| |||| ||||||| ||||| ||||||| |||||||| | ||||| ||||||||||| || || |
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|
| T |
46172741 |
actattgatctctattctttaacttaaccaagtggcttgcaaatatttagctgacactactaccatctccaatcaaatgcttttcttcttgtactgcaac |
46172840 |
T |
|
| Q |
218 |
tgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatct |
317 |
Q |
| |
|
|| | |||| |||||||||||| | |||||| || ||||||| ||| |||||||||||||||||||||||| |||||| ||| |||||| | ||| |
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|
| T |
46172841 |
tgcattcccgtgatctgaacaatgacgatgcagtgttgatttgccttttgttcgagccttgcggcaaggattgaaaagatctttgtgggtctggctgtct |
46172940 |
T |
|
| Q |
318 |
ttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggat |
417 |
Q |
| |
|
|||||||| ||| |||| | ||||||| ||||||||||||||||||||||||||||||| || || |||||||| |||| |||||||||||| |||| |
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|
| T |
46172941 |
ttctttttttgtttcttctgtacatgcaaatattcatttgctatacattccaatgctctaactgtcaacggtctgtttctagtgctctgtctcctgggat |
46173040 |
T |
|
| Q |
418 |
t |
418 |
Q |
| |
|
| |
|
|
| T |
46173041 |
t |
46173041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 46620614 - 46620443
Alignment:
| Q |
16 |
caatttaaagtcaggtaggagaaccatcagtacattctaaaccattttgttttcaaaggtcaaaaactccatgatgatgacagaggc--atgtatcttaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| || | | | || ||||||||| | |
|
|
| T |
46620614 |
caatttaaagtcaggtaggagaaccatcagtacattctaaaccattttgtatccaaaggtcagaaactccatgacga-cagatatgcatatgtatcttca |
46620516 |
T |
|
| Q |
114 |
aagaaaataactattgacttctactctttaacttaaccaattggc--acaaatatctagctaacactaccatc |
184 |
Q |
| |
|
|| |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
46620515 |
aaataaatcactattgacctctactctttaacttaaccaattggcttgcaaatatctagctaacaccaccatc |
46620443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 418
Target Start/End: Original strand, 46641600 - 46641813
Alignment:
| Q |
199 |
tttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatc |
298 |
Q |
| |
|
|||||||||| |||||| || | ||||||||||||||||| | | |||||||| ||| |||| |||| ||||||||| |||||||||||||||||| |
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|
| T |
46641600 |
tttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatc |
46641699 |
T |
|
| Q |
299 |
ttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttccta |
398 |
Q |
| |
|
|| ||||| | ||| || |||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| || | | |||||| ||| |
|
|
| T |
46641700 |
ttagtgtg------tgtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttcta |
46641793 |
T |
|
| Q |
399 |
gagctctgtctcctcggatt |
418 |
Q |
| |
|
| ||| ||||||||| |||| |
|
|
| T |
46641794 |
gtgctttgtctcctcagatt |
46641813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 18373663 - 18373896
Alignment:
| Q |
16 |
caatttaaagtcaggtaggagaaccatcagtacattctaaaccattttgttttcaaaggtcaaaaactccatgatgatgacaga--ggcatgtatcttaa |
113 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18373663 |
caatttaaagtcaggtaagagaatctatagtacattctaaaccattttgtttccaaaggtcaaaaactccatgatgatgacagataggcatgtatcttaa |
18373762 |
T |
|
| Q |
114 |
aagaaaataactattgacttctactctttaacttaaccaattggca--caaatatctagctaacactaccatctccattgaaatgtttttcttcttgcgc |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18373763 |
aagaaaataactattgacctctactctttaacttaaccaattggcttgcaaatatctagctaacactaccatctccattgaaatgtttttcttcttgtgc |
18373862 |
T |
|
| Q |
212 |
taaaattgtagtcccatgatctgaacaacaataa |
245 |
Q |
| |
|
||||| || ||||||||||||||||||| ||||| |
|
|
| T |
18373863 |
taaaactgcagtcccatgatctgaacaataataa |
18373896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 46 - 418
Target Start/End: Original strand, 15767816 - 15768183
Alignment:
| Q |
46 |
tacattctaaaccattttgttttcaaaggtcaaaaactccatgatgatgacagaggcatgtatcttaaaagaaaataactattgacttctactctttaac |
145 |
Q |
| |
|
||||||| |||||| |||| || |||| |||| |||||||||||||| | | ||||| ||| ||||||| | | ||||||||| ||||||||||||| |
|
|
| T |
15767816 |
tacattcaaaaccaatttgattacaaaagtcagaaactccatgatgac-agataggcaggtaacttaaaaaattaccactattgacctctactctttaac |
15767914 |
T |
|
| Q |
146 |
ttaaccaattggcac--aaatatctagctaacactaccatctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaat |
243 |
Q |
| |
|
|||||||| | || ||| || ||||||||||||| ||||||| | ||||||||||||||||| ||||||| || | | ||||||||||||||| || |
|
|
| T |
15767915 |
ttaaccaagtagcttgaaaacatttagctaacactacgatctccaatcaaatgtttttcttcttgtgctaaaactgaattaccatgatctgaacaatgat |
15768014 |
T |
|
| Q |
244 |
aatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatg |
343 |
Q |
| |
|
| ||| ||||||| ||| |||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| | || || |
|
|
| T |
15768015 |
ga------attgatttgccttttgtttgagcactgcagcaaggattgaaaggatcttcatgtgtctggatgtctttctttttttgtctcttttgtacgtg |
15768108 |
T |
|
| Q |
344 |
caggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggatt |
418 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| || || |||||||| |||| ||| |||| ||| ||||| |
|
|
| T |
15768109 |
caggtattcatttgctatacattctaatgctctaactgtcaacggtctgtttctagtgctttgtcgcctaggatt |
15768183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 1537904 - 1537853
Alignment:
| Q |
251 |
cattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttgg |
302 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
1537904 |
cattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgg |
1537853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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