View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_6 (Length: 702)
Name: NF20633_high_6
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Complemental strand, 44380157 - 44379484
Alignment:
| Q |
20 |
ctagaaagaactatttgttacaaaacttgttttatcaagaaaagaatcactctttcatattcatttatacgctccaacacttccctcctttaatgtttca |
119 |
Q |
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| T |
44380157 |
ctagaaagaactatttgttacaaaacttgttttatcaagaaaagaatcactctttcatattcatttatacgctccaacacttccctcctttaatgtttca |
44380058 |
T |
|
| Q |
120 |
atattttcttctgtctctgacattgtttgagtactatgtatagttatgtgaggtggttttttcctgtgatgtgtttctgagcnnnnnnnnnnnnnnnntt |
219 |
Q |
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| T |
44380057 |
atattttcttctgtctctgacattgtttgagtactatgtatagttacgtgaggtggttttttcctgtgatgtgtttctgagcgtgtgtgtgtgtgtgttt |
44379958 |
T |
|
| Q |
220 |
aatgcaaagt-gtgttctgtgttttataggagatgacagagacagataagagttgtttttgaagagggttttgaagattcatgtgattgtgtttctgaat |
318 |
Q |
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| T |
44379957 |
aatgcaaagttgtgttctgtgttttataggagatgacagagacagataagagttgtttttgaagagggttttgaagattcatgtgattgtgtttctgaat |
44379858 |
T |
|
| Q |
319 |
gttagtttcaatggacactaatggaagattagttgcaggatcacataacaggaatgagtttgttcttatcaatgctgatgacactgcaagagtgagtgta |
418 |
Q |
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| T |
44379857 |
gttagtttcaatggacactaatggaagattagttgcaggatcacataacaggaatgagtttgttcttatcaatgctgatgacactgcaagagtgagtgta |
44379758 |
T |
|
| Q |
419 |
attccattttctttatctcaaacttgtttcttgtttaatacttgctctcttaattgctgtgaagaatttgtagcttgaatcatagcctttaaaatatgtg |
518 |
Q |
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| T |
44379757 |
attccattttctttatctcaaacttgtttcttgtttaatacttgctctcttaattgctgtgaagaatttgtagcttgaatcatagcctttaaaatatgtg |
44379658 |
T |
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| Q |
519 |
attatttctctgaatttgttttctatctgagctgcaacaggtgtactagtttannnnnnncacccttttgttgatgtattcttggaattttccatctaag |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44379657 |
attatttctctgaatttgttttctatctgagctgcaacaggtgtactagtttatttttttcacccttttgttgatgtattcttggaattttccatctaag |
44379558 |
T |
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| Q |
619 |
ttcttccatttgattttacaaataatcaggaaaaactgtttcacttgtcaagtatttttgtaattgggtctctg |
692 |
Q |
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| T |
44379557 |
ttcttccatttgattttacaaataatcaggaaaaactgtttcacttgtcaagtatttttgtaattgggtctctg |
44379484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 28846937 - 28846887
Alignment:
| Q |
323 |
gtttcaatggacactaatggaagattagttgcaggatcacataacaggaat |
373 |
Q |
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|||||||||||||||||||| ||| || ||||||| |||||||||| |||| |
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| T |
28846937 |
gtttcaatggacactaatgggagactaattgcagggtcacataacatgaat |
28846887 |
T |
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