View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_62 (Length: 418)
Name: NF20633_high_62
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_62 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 47322112 - 47321724
Alignment:
| Q |
11 |
cacagagaggttcttctcatcacaacgacaccgctcaattctacgatcaaatcaaatccaagcttcagctcgatttcaacaagaaccagctcgttgagaa |
110 |
Q |
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| T |
47322112 |
cacagagaggttcttctcatcacaacgacaccgctcaattctacgatcaaatcaaatccaagcttcagctcgatttcaacaagaaccagctcgttgagaa |
47322013 |
T |
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| Q |
111 |
gatccgaaggttgaagaagaaatacagaaacgttgtaagcaaaatgagctccggtaaggaattcgtcttcaaaactgctcacgatcaagccacgtttgaa |
210 |
Q |
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| T |
47322012 |
gatccgaaggttgaagaagaaatacagaaacgttgtaagcaaaatgagctccggtaaggaattcgtcttcaaaactgctcacgatcaagccacgtttgaa |
47321913 |
T |
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| Q |
211 |
atctctcgcaagatctggaacaacgtggcgccaatcgccggtgatattgctatagacgacgatgaaatcaatctcaatccaattcctaaccctaacctca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47321912 |
atctctcgcaagatctggaacaacgtggcgccaatcgccggtgatattgctatagacgacgatgaaatcaatctcaatccaatttctaaccctaacctca |
47321813 |
T |
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| Q |
311 |
atttcactcccgtaattctcaaaagtgaggtaaattcaaccacgcggaagcgttcacggcctcgatccgtttctatcagaagctttgag |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47321812 |
atttcactcccgtaattctcaaaagtgaggtaaattcaaccacgcggaagcgttcacggcctcgatccgtttctatcagaagctttgag |
47321724 |
T |
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