View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_67 (Length: 404)
Name: NF20633_high_67
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_67 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 64 - 394
Target Start/End: Complemental strand, 2868761 - 2868432
Alignment:
| Q |
64 |
aaggataggtacactaaggatagtaggttaaacaaagtgaaagatactatttaaatgactatgtcacattgcaatttatacttgacaaatggcttttatc |
163 |
Q |
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| T |
2868761 |
aaggataggtacactaaggatagtaggttaaacaaagtgaaagatactatttaaatgactttgtcacattgcaatttatacttgacaaatggcttttaac |
2868662 |
T |
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| Q |
164 |
gcatccaatgtataaatgccactcacaagaacgttacctttgttgttattcaataaatagttgtatttaaatcaataccatgaggttgacattttttatc |
263 |
Q |
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| T |
2868661 |
gcatccaatgtataaatgccactcacaagaacgttacctttgttgttattcaataaatagttgtatttaaatcaataccatgaggttgacattttttatc |
2868562 |
T |
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| Q |
264 |
aacaatattctaccatgcatttacttaagtacatattttaatccaagagaatattaaattagagataattttcttatgcaatctcagttatgtattcaat |
363 |
Q |
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| T |
2868561 |
aacaatattctaccatgcatttacttaagtacatattttaatccaagagaatattaaattagagataattct-ttatgcaatcttagttatgtattcaat |
2868463 |
T |
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| Q |
364 |
ggtttctactatactaccttttgtctctgtg |
394 |
Q |
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| T |
2868462 |
ggtttctactatactaccttttgtctttgtg |
2868432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 2868815 - 2868778
Alignment:
| Q |
34 |
ttattgaatataaataaaatgttgaaattgaaggatag |
71 |
Q |
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| T |
2868815 |
ttattgaatataaataaaatgttgaaattgaaggatag |
2868778 |
T |
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