View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_high_74 (Length: 377)

Name: NF20633_high_74
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_high_74
NF20633_high_74
[»] chr6 (1 HSPs)
chr6 (10-361)||(12975338-12975699)
[»] chr3 (6 HSPs)
chr3 (10-74)||(8023064-8023128)
chr3 (88-169)||(24744459-24744540)
chr3 (96-193)||(40485149-40485247)
chr3 (103-169)||(30285118-30285184)
chr3 (39-79)||(11833687-11833727)
chr3 (88-195)||(51463552-51463660)
[»] chr1 (6 HSPs)
chr1 (78-169)||(8514565-8514656)
chr1 (88-193)||(42400971-42401077)
chr1 (88-194)||(33780598-33780705)
chr1 (91-212)||(37583101-37583223)
chr1 (88-169)||(4658976-4659057)
chr1 (88-138)||(32913885-32913935)
[»] chr7 (3 HSPs)
chr7 (83-207)||(33815970-33816095)
chr7 (23-79)||(3136254-3136310)
chr7 (29-79)||(9128585-9128635)
[»] chr2 (2 HSPs)
chr2 (13-79)||(24280503-24280569)
chr2 (91-169)||(21455135-21455213)
[»] chr8 (2 HSPs)
chr8 (92-169)||(3348107-3348184)
chr8 (106-160)||(9415514-9415568)
[»] scaffold0092 (1 HSPs)
scaffold0092 (83-141)||(4858-4916)
[»] scaffold0282 (1 HSPs)
scaffold0282 (36-74)||(20236-20274)
[»] chr4 (1 HSPs)
chr4 (88-138)||(32212736-32212786)
[»] scaffold0218 (1 HSPs)
scaffold0218 (38-79)||(27916-27957)
[»] chr5 (2 HSPs)
chr5 (87-144)||(38037385-38037442)
chr5 (94-138)||(15635306-15635350)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 361
Target Start/End: Original strand, 12975338 - 12975699
Alignment:
Q  10 catcatcacaatcaacgccaaaacaaaatcatgtttatcatcaaccattcatcaaatagtcatcatcaaacgaagattctctgacaaaaggtttaaatcg 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12975338 catcgtcacaatcaacgccaaaacaaaatcatgtttatcatcaaccattcatcaaatagtcatcatcaaacgaagattctctgacaaaaggtttgaatcg 12975437  T
Q  110 gtcccactactaactctttatcatttacaatttaaaaatataatgattattttaat-aaaagtactgcgaagtccacttaagaatgttgtattaaatgag 208  Q
    || ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  12975438 gttccactactaactctttatcgtttacattttaaaaatataatgattattttaataaaaagtactgcgaagtccacttaagaatgtggtattaaatgag 12975537  T
Q  209 acttnnnnnnnnnnnnnnnnntgctccaatgaaaatacctattatgtttcaagtcttaaaacagaggagacatcacggattgaagtacg----------t 298  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |    
T  12975538 acttaaaagatcccaaaaaaatgctccaatgaaaatacctattatgtttcaagtcttaaaacagtggagacatcacggattgaagtacgttttagacact 12975637  T
Q  299 tttagtccatctcctcattgggtcccccaacaactttaatttaatatttttatacttaatttt 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  12975638 tttagtccatctcctcattgggt-ccccaacaactttaatttaatatttttgtacttaatttt 12975699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 8023064 - 8023128
Alignment:
Q  10 catcatcacaatcaacgccaaaacaaaatcatgtttatcatcaaccattcatcaaatagtcatca 74  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  8023064 catcatcacaatcaacaccaaaacaaaatcatgtttatcaccaaacattcatcaaatagtcatca 8023128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 24744459 - 24744540
Alignment:
Q  88 ctctgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaataaaa 169  Q
    |||| ||||||||| ||||||| |||||| |||||||||| |||||||||| |  || |||| |||||||||||||||||||    
T  24744459 ctctaacaaaaggtctaaatcgatcccaccactaactcttcatcatttacattccaacaatacaatgattattttaataaaa 24744540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 40485149 - 40485247
Alignment:
Q  96 aaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaat-aaaagtactgcgaagtccacttaagaat 193  Q
    |||||| |||||||||||||| || ||||||| | |||||||| |  || || | ||||||||||||||| ||||||| || || ||||||||||||||    
T  40485149 aaaggtctaaatcggtcccaccaccaactcttcagcatttacattccaacaaaacaatgattattttaataaaaagtagtgtgaggtccacttaagaat 40485247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 30285184 - 30285118
Alignment:
Q  103 taaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaataaaa 169  Q
    ||||||| ||| || |||||||||| || ||||||| || || |||| |||||||||||||||||||    
T  30285184 taaatcgatccaaccactaactcttcataatttacatttcaacaatacaatgattattttaataaaa 30285118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 11833727 - 11833687
Alignment:
Q  39 catgtttatcatcaaccattcatcaaatagtcatcatcaaa 79  Q
    ||||||||||| ||| |||||||||||||||||||| ||||    
T  11833727 catgtttatcaccaaacattcatcaaatagtcatcaccaaa 11833687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 51463660 - 51463552
Alignment:
Q  88 ctctgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaataaa-agtactgcgaagtccact 186  Q
    |||| |||||| |||||||||||||  || |||||||||| || ||||| | || || | || |||||||||||||| ||| |||| || |  |||||||    
T  51463660 ctctcacaaaatgtttaaatcggtcataccactaactcttcattatttatatttcaacagtaaaatgattattttaacaaagagtagtgtggggtccact 51463561  T
Q  187 taagaatgt 195  Q
    |||||||||    
T  51463560 taagaatgt 51463552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 8514656 - 8514565
Alignment:
Q  78 aacgaagattctctgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaataaaa 169  Q
    |||||||| ||| |||||||||||||||||  |||| |||| ||||||||||||||||||| | ||| |||| |||||||||||||||||||    
T  8514656 aacgaagactctttgacaaaaggtttaaatgagtccgactaataactctttatcatttacattctaacaatacaatgattattttaataaaa 8514565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 42401077 - 42400971
Alignment:
Q  88 ctctgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaat-aaaagtactgcgaagtccact 186  Q
    |||||||||||||| |||||||||||||| || ||||||| |||||||||| |  || |||| ||||||||||||||| ||||||| || |  |||||||    
T  42401077 ctctgacaaaaggtctaaatcggtcccaccacgaactcttcatcatttacattccaacaatacaatgattattttaataaaaagtagtgtggggtccact 42400978  T
Q  187 taagaat 193  Q
    |||||||    
T  42400977 taagaat 42400971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 33780598 - 33780705
Alignment:
Q  88 ctctgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaat-aaaagtactgcgaagtccact 186  Q
    |||| ||||||||| ||||||| |||||||||||| |||| |||||||||  |  || |||| ||||||||||||||| ||||||| || | ||||||||    
T  33780598 ctctcacaaaaggtctaaatcgatcccactactaattcttcatcatttacgttccaacaatacaatgattattttaatgaaaagtagtgtggagtccact 33780697  T
Q  187 taagaatg 194  Q
    ||||||||    
T  33780698 taagaatg 33780705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 37583101 - 37583223
Alignment:
Q  91 tgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaat-aaaagtactgcgaagtccacttaa 189  Q
    |||||||| || ||||||||| |||| ||| |||||| |||||||||| || ||  ||| ||||||||||||||| ||||||| || || ||||||||||    
T  37583101 tgacaaaaagtctaaatcggttccaccactgactcttcatcatttacatttcaacgatacaatgattattttaataaaaagtagtgtgaggtccacttaa 37583200  T
Q  190 gaatgttgtattaaatgagactt 212  Q
     ||||  || |||| ||||||||    
T  37583201 aaatggggtcttaagtgagactt 37583223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 4658976 - 4659057
Alignment:
Q  88 ctctgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaataaaa 169  Q
    |||||||||||||| ||||| | ||| || |||||||||| |||||||| | |  || ||||||||||||||||||||||||    
T  4658976 ctctgacaaaaggtctaaattgatccaaccactaactcttcatcatttatattccaacaatataatgattattttaataaaa 4659057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 32913935 - 32913885
Alignment:
Q  88 ctctgacaaaaggtttaaatcggtcccactactaactctttatcatttaca 138  Q
    |||| |||||| | |||||| |||||||||| |||||||||||||||||||    
T  32913935 ctctaacaaaaagcttaaatgggtcccactaataactctttatcatttaca 32913885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 33815970 - 33816095
Alignment:
Q  83 agattctctgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaat-aaaagtactgcgaagt 181  Q
    |||| |||| |||||| || |||| ||||||||| |||||||||| |||||||||| || || |||| || |||||||||||| ||||||| || | ||     
T  33815970 agatcctctaacaaaatgtctaaaccggtcccaccactaactcttcatcatttacatttcaacaatacaacgattattttaataaaaagtagtgtggagc 33816069  T
Q  182 ccacttaagaatgttgtattaaatga 207  Q
    |||||||||||||  || ||||||||    
T  33816070 ccacttaagaatggggttttaaatga 33816095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 3136254 - 3136310
Alignment:
Q  23 aacgccaaaacaaaatcatgtttatcatcaaccattcatcaaatagtcatcatcaaa 79  Q
    |||| ||||||| || ||||||||||| ||| |||||||||||||||||||| ||||    
T  3136254 aacgtcaaaacataaacatgtttatcaccaatcattcatcaaatagtcatcaccaaa 3136310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 9128635 - 9128585
Alignment:
Q  29 aaaacaaaatcatgtttatcatcaaccattcatcaaatagtcatcatcaaa 79  Q
    |||| |||||||||||||||| |||  ||||||||||||||||||| ||||    
T  9128635 aaaaaaaaatcatgtttatcaccaaatattcatcaaatagtcatcaccaaa 9128585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 24280503 - 24280569
Alignment:
Q  13 catcacaatcaacgccaaaacaaaatcatgtttatcatcaaccattcatcaaatagtcatcatcaaa 79  Q
    ||||| ||||||| |||||||| |||||| ||||||| ||| |||||||||||||||||||| ||||    
T  24280503 catcataatcaacaccaaaacataatcatatttatcaccaaacattcatcaaatagtcatcaccaaa 24280569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 21455135 - 21455213
Alignment:
Q  91 tgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaataaaa 169  Q
    ||||| ||||||||||||||| |||| |||||||||| |||||||||| |  || |||| | | |||||||||||||||    
T  21455135 tgacagaaggtttaaatcggttccacgactaactcttcatcatttacattccaacaatacagtaattattttaataaaa 21455213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 3348184 - 3348107
Alignment:
Q  92 gacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaaaaatataatgattattttaataaaa 169  Q
    ||||||| |||||||||| ||||||| ||||||||| | |||||||| |  || |||| |||||||||||||||||||    
T  3348184 gacaaaatgtttaaatcgatcccactgctaactcttcaacatttacattccaacaatacaatgattattttaataaaa 3348107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 9415514 - 9415568
Alignment:
Q  106 atcggtcccactactaactctttatcatttacaatttaaaaatataatgattatt 160  Q
    ||||||| ||| |||||||||| |||||||||| || || |||||||||||||||    
T  9415514 atcggtctcaccactaactcttcatcatttacatttcaacaatataatgattatt 9415568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 4858 - 4916
Alignment:
Q  83 agattctctgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatt 141  Q
    ||||||||| |||||| ||| |||| |||||||| | ||||||||||||||||||||||    
T  4858 agattctctaacaaaatgttaaaattggtcccaccaataactctttatcatttacaatt 4916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 20274 - 20236
Alignment:
Q  36 aatcatgtttatcatcaaccattcatcaaatagtcatca 74  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  20274 aatcatctttatcatcaaacattcatcaaatagtcatca 20236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 32212736 - 32212786
Alignment:
Q  88 ctctgacaaaaggtttaaatcggtcccactactaactctttatcatttaca 138  Q
    |||| ||||||||| ||||| |||||||| | |||||||||||||||||||    
T  32212736 ctctaacaaaaggtctaaatgggtcccaccaataactctttatcatttaca 32212786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 27957 - 27916
Alignment:
Q  38 tcatgtttatcatcaaccattcatcaaatagtcatcatcaaa 79  Q
    |||| ||||||| ||| |||||||||||||||||||||||||    
T  27957 tcatatttatcaacaaacattcatcaaatagtcatcatcaaa 27916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 38037442 - 38037385
Alignment:
Q  87 tctctgacaaaaggtttaaatcggtcccactactaactctttatcatttacaatttaa 144  Q
    ||||| |||||| |||||||| ||| |||| | ||||||||||||||||||| |||||    
T  38037442 tctctaacaaaaagtttaaatgggttccaccaataactctttatcatttacattttaa 38037385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 15635306 - 15635350
Alignment:
Q  94 caaaaggtttaaatcggtcccactactaactctttatcatttaca 138  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||    
T  15635306 caaaaagtttaaatgggtcccacaactaactctttctcatttaca 15635350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University