View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_76 (Length: 374)
Name: NF20633_high_76
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_76 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 53970306 - 53969962
Alignment:
| Q |
14 |
caaaggatataaatcttgaactcgtgtttcacccgtgtattttctccatactggaccatgtttgagaaatctcactagattctaagatgcaatgttcacc |
113 |
Q |
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| T |
53970306 |
caaaggatataaatcttgaactcgtgtttcacccgtgtattttctccatactggaccatgtttgagaaatctcactagattctaagatgcaatgttcac- |
53970208 |
T |
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| Q |
114 |
actagattttgctctctctccctcaactacttctccctgatttctatctattgtaagagctctgcctttagccccattgtcgaaaccaacaacatttctt |
213 |
Q |
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| T |
53970207 |
actagattttgctctctctccctcaactacttctccctgatttctatctattgtaagagctctgcctttagccccgttgtcgaaaccaacaacatttctt |
53970108 |
T |
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| Q |
214 |
ccgggcattatagcttatcatatatctcatcacctatagctaaaaccattacctcttgcacacataaaacccctccctctggtgttttggagtttaggag |
313 |
Q |
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| T |
53970107 |
ccgggcattatagcttatcatatatctcatcacctatagctaaaaccattaccccttgcacacataaaacccctccctctggtgttttggagtttaggag |
53970008 |
T |
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| Q |
314 |
attgaagctctaattggtagctgcattcctaccacgcagtcataac |
359 |
Q |
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| T |
53970007 |
attgaagctctaattggtagctgcattcctaccacgcagtcataac |
53969962 |
T |
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