View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_86 (Length: 352)
Name: NF20633_high_86
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_86 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 42393313 - 42393636
Alignment:
| Q |
10 |
agaagcaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctaacggtttctcccaaatggaa |
109 |
Q |
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| T |
42393313 |
agaaccaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaa |
42393412 |
T |
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| Q |
110 |
gggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcatta |
209 |
Q |
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| T |
42393413 |
gggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgagacatta |
42393512 |
T |
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| Q |
210 |
gaagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttccc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393513 |
gaagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttccc |
42393612 |
T |
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| Q |
310 |
aaccactgcttccaattcctcttg |
333 |
Q |
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| T |
42393613 |
aaccactgcttccaattcctcttg |
42393636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 333
Target Start/End: Original strand, 42376766 - 42377084
Alignment:
| Q |
15 |
caaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctaacggtttctcccaaatggaagggtc |
114 |
Q |
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| T |
42376766 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaaccttgtaggatcaaattctagtgggttctcccaaacataagggtc |
42376865 |
T |
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| Q |
115 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagt |
214 |
Q |
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| T |
42376866 |
tctatgaatagcccaaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagt |
42376965 |
T |
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| Q |
215 |
ggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaacca |
314 |
Q |
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||||||| ||||| |||||||| ||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42376966 |
ggaagtgcagggtgtaaacgaagagtttctttcatcactgcatgtaagtaggttagcttgtgaatatgagactcttctactaagttatcttttccaacca |
42377065 |
T |
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| Q |
315 |
ctgcttccaattcctcttg |
333 |
Q |
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| | ||| || |||||||| |
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| T |
42377066 |
cagtttctaactcctcttg |
42377084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 128 - 333
Target Start/End: Original strand, 42387228 - 42387433
Alignment:
| Q |
128 |
caaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggt |
227 |
Q |
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|||||||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || ||||||||||| ||||| |
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| T |
42387228 |
caaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagtggaagtgttgggt |
42387327 |
T |
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| Q |
228 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttccaattc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
42387328 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttttgaatatgagactcttctactaagttatctttcccaaccacgatttccagttc |
42387427 |
T |
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| Q |
328 |
ctcttg |
333 |
Q |
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|||||| |
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| T |
42387428 |
ctcttg |
42387433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 42387162 - 42387220
Alignment:
| Q |
15 |
caaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaacctt |
73 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42387162 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaacctt |
42387220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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