View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_89 (Length: 348)
Name: NF20633_high_89
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_89 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 106 - 330
Target Start/End: Complemental strand, 44634479 - 44634255
Alignment:
| Q |
106 |
ttgcccttttttattcataatgtatttcatgtatatatattgaattgaactaaattggatcatctttatctcaaaatgtgcttagcctgatcactcttct |
205 |
Q |
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| T |
44634479 |
ttgcccttttttattcataatgtatttcatgtatatatattgaattgatctaaattgaatcatctttatctcaaaatgcgcttagcctgatcactcttct |
44634380 |
T |
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| Q |
206 |
tttcggttgacatatctgtctaccactaaaatcgttcataggattctttgtatttatgattattatcttctttcataaattatcgcataatacctcaaat |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44634379 |
tttcggttgacatatccgtctaccactaaaatcgttcataggattctttgtattgatgattattatcttcttttataaattatcgcataatacctcaaat |
44634280 |
T |
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| Q |
306 |
ataattttgagccgcgccacgtgtg |
330 |
Q |
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||||||||||||||||||||||||| |
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| T |
44634279 |
ataattttgagccgcgccacgtgtg |
44634255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 44634699 - 44634602
Alignment:
| Q |
12 |
tcatcactttatatgggaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctttgc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44634699 |
tcatcactttatatgggaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttttatgtatgctttgc |
44634602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 44398109 - 44398043
Alignment:
| Q |
36 |
acaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctt |
106 |
Q |
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| T |
44398109 |
acaatccttcttaagttcacttgctaaa----tcatctcactccttccaaatctcttttgtatgtatgctt |
44398043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 44397923 - 44397891
Alignment:
| Q |
113 |
tttttattcataatgtatttcatgtatatatat |
145 |
Q |
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| T |
44397923 |
ttttttttcataatgtatttcatgtatatatat |
44397891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 49128715 - 49128650
Alignment:
| Q |
138 |
atatatattgaattgaactaaattggatcatctttatctcaaaatgtgcttagcctgatcactctt |
203 |
Q |
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| T |
49128715 |
atatacattgaattgaactaaattggtgcatctttatctcaacatatgcttagcttgatccctctt |
49128650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 49129312 - 49129234
Alignment:
| Q |
28 |
gaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctt |
106 |
Q |
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|||||||| |||| ||||||||||||||||||||||| || ||||||||| | | || |||||||| |||||||||| |
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| T |
49129312 |
gaatcctagcaatgtttcttaagttcacttgctaaaaagttcatctcactcatttaaactctcttttacatgtatgctt |
49129234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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