View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_96 (Length: 330)
Name: NF20633_high_96
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_96 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 45305221 - 45305525
Alignment:
| Q |
17 |
aaggagttatagttgaagtgttgttaggagaagtagtagggactgggactggtcttggaatgagaggccttagtttccttccactgaatggataatcagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305221 |
aaggagttatagttgaagtgttgttaggagaagtagtagggactgggactggtcttggaatgagaggccttagtttccttccactgaatggataatcagc |
45305320 |
T |
|
| Q |
117 |
catgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaactagggcttttctcactaaaaggctaattattataaatagtagaaggaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305321 |
catgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaactagggcttttctcactaaaaggctaattattataaatagtagaaggaat |
45305420 |
T |
|
| Q |
217 |
gaagttacttagctagctataaacactgtgttaaaaaacacatataataaatgaaggggattgaaatggaaaagtgggagtagttgttagatatagaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305421 |
gaagttacttagctagctataaacactgtgttaaaaaacacatataataaatgaaggggattgaaatggaaaagtgggagtagttgttagatatagaaat |
45305520 |
T |
|
| Q |
317 |
atttt |
321 |
Q |
| |
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||||| |
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| T |
45305521 |
atttt |
45305525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 40005259 - 40005490
Alignment:
| Q |
17 |
aaggagttatagttgaagtgttgttaggagaagtagtagggactggg------actggtcttggaatgagaggccttagtttccttccactgaatggata |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
40005259 |
aaggagttatagttgaagtgttgttaggagaagtagtagggactgggattgggactggtcttgacatgagaggccttagtttccttccacataatggata |
40005358 |
T |
|
| Q |
111 |
atcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaactagggcttttctcactaaaaggctaattattataaatagtaga |
210 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
40005359 |
atcagccatgttgaactcaccaccttcactgtaacccaccatccacatgttgtcaactaggccttttctcactaaaaggcta---attataaatagtaga |
40005455 |
T |
|
| Q |
211 |
aggaatgaagttacttagctagctataaacactgtgtta |
249 |
Q |
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| ||||||||||||| |||||||||||||||||||| |
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| T |
40005456 |
acgaatgaagttact----tagctataaacactgtgtta |
40005490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 40220287 - 40220062
Alignment:
| Q |
17 |
aaggagttatagttgaagtgttgttaggagaagtagtagggactgggactggtcttggaatgagaggccttagtttccttccactgaatggataatcagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40220287 |
aaggagttatagttgaagtgttgttaggagaagtagtagggactaggactggtcttggcatgagaggccttagtttccttccacagaatggataatcagc |
40220188 |
T |
|
| Q |
117 |
catgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaactagggcttttctcactaaaaggctaattattataaatagtagaaggaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40220187 |
catgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaactaggccttttctcactaaaaggctaa---ttataaatagtagaacgaat |
40220091 |
T |
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| Q |
217 |
gaagttacttagctagctataaacactgtgtta |
249 |
Q |
| |
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||||||||| |||||||||||||||||||| |
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|
| T |
40220090 |
gaagttact----tagctataaacactgtgtta |
40220062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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