View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_100 (Length: 329)
Name: NF20633_low_100
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 27154666 - 27154857
Alignment:
| Q |
1 |
ctcacctccaccaccatcaccgcctcctccgtcgttatctccacctccagctttacctcctccgccaccaatgcccaatgtgcaatattctgcttctgct |
100 |
Q |
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| T |
27154666 |
ctcacctccaccaccatcaccgccacctccgtcgttatctccatctccagctttacctcctccaccaccattgcccaatgtgcaatattctgcttctgct |
27154765 |
T |
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| Q |
101 |
ttatcatctcctcctaattctctccgtaaacaaccacctccgtcactgcctcccccggagaaatctcctacatcttcatcatcatcatcatc |
192 |
Q |
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| T |
27154766 |
ttatcatctcctcctaattctctccgtaaacaaccacctccgtcactgcctcccccggagaaatctcctacatcttcatcatcatcatcatc |
27154857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 27154892 - 27154985
Alignment:
| Q |
218 |
acatcctcgaaggattcgccacataaagcaatgcatgcaaaatcagggagttctcattcctctggccacacgcccggtgaaatagctgcttatg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27154892 |
acatcctcgaaggattcgccacataaagcaatgcatgcaaaatcagggagttctcattcctctggccacacgcccggtgaaatagctgcttatg |
27154985 |
T |
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