View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_101 (Length: 328)
Name: NF20633_low_101
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_101 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 44056799 - 44056507
Alignment:
| Q |
19 |
gaaacaaaacagatgattatatagtgtgttatgcaccagccatgataacaacgaatggaatatggcaaggagatagccctttggaattttctctgccact |
118 |
Q |
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| T |
44056799 |
gaaacaaaacaggtgattatatagtgtgttatgcaccagccatgataacaacgaatggaatatggcaaggagatagccctttggaattttctctgccact |
44056700 |
T |
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| Q |
119 |
tttcatcttacaattaaccttagttgttgcagccactcgcatatttgtctttgttctcaagccctttcgccagccgcgcgtcatagcagaaattctggtt |
218 |
Q |
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| T |
44056699 |
tttcatcttacaattaaccttagttgttgcagccactcgcatatttgtctttgttctcaagccctttcgccagccgcgcgtcatagcagaaattctggtt |
44056600 |
T |
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| Q |
219 |
agttgttttcttttcaaacacnnnnnnnctgtgatcatctcataatgctgatagatgtgacgtgacattatcttcggtgcagggaggagtaat |
311 |
Q |
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| T |
44056599 |
agttgttttcttttcaaacacaaaaaaactgtgatcatctcataatgctgatagatgtgacgtgacattatcttcggtgcagggaggagtaat |
44056507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 39238708 - 39238528
Alignment:
| Q |
42 |
gtgtgttatgcaccagccatgataacaacgaatggaatatggcaaggagatagccctttggaattttctctgccacttttcatcttacaattaaccttag |
141 |
Q |
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||||||||| ||||| | ||||||||||| |||||||||||||||||||||| |||||| || | |||||| || || ||||| ||||| | | |||| |
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| T |
39238708 |
gtgtgttattcaccaactatgataacaacaaatggaatatggcaaggagataaccctttagactattctcttcctctcttcattctacaagttattttag |
39238609 |
T |
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| Q |
142 |
ttgttgcagccactcgcatatttgtctttgttctcaagccctttcgccagccgcgcgtcatagcagaaattctggttagtt |
222 |
Q |
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| T |
39238608 |
ttgttattgccacccgaatcttcgtcttcatactcaagcccattcgtcagccacgcgttatagccgaaatcttggttagtt |
39238528 |
T |
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