View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_103 (Length: 326)
Name: NF20633_low_103
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_103 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 6163569 - 6163389
Alignment:
| Q |
126 |
tcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacattat |
225 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6163569 |
tcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacggaaaagtatataaaagtgacacattat |
6163470 |
T |
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| Q |
226 |
tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6163469 |
tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttaatggaact |
6163389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 121 - 306
Target Start/End: Original strand, 28158708 - 28158895
Alignment:
| Q |
121 |
agaattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaa--agtgac |
218 |
Q |
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| T |
28158708 |
agaattcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaattaacggaaaagtatataaattagtgac |
28158807 |
T |
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| Q |
219 |
acattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaact |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28158808 |
acattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatggaact |
28158895 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 123 - 306
Target Start/End: Complemental strand, 14359609 - 14359426
Alignment:
| Q |
123 |
aattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacat |
222 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| || |
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| T |
14359609 |
aattcaatatgaacttgcagaagaagctcatttgtgatagagaaatttgtataggctattaaacttgaaactaacggaaaagtatataaaagtgacaaat |
14359510 |
T |
|
| Q |
223 |
tattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaact |
306 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14359509 |
tattacaattcaggatagaactcataagtgacattagtctctcttttttacaagtgacacattatcacaattcttgatggaact |
14359426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 204 - 306
Target Start/End: Complemental strand, 4840069 - 4839967
Alignment:
| Q |
204 |
gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatgga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4840069 |
gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatgga |
4839970 |
T |
|
| Q |
304 |
act |
306 |
Q |
| |
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||| |
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|
| T |
4839969 |
act |
4839967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 55692095 - 55692203
Alignment:
| Q |
7 |
gtgagatgaaagatgtattttgtccatgaaacaatgtgaagagaagaagtgaggtggcacattgtagggatggaagtggccctactagcacgattgcaag |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55692095 |
gtgatatgaaagatgtattttgtccatgaaacaatgagaagagaagaagtgaggtggcacattgtagggatggaagtgtccctactagcacgattgcaag |
55692194 |
T |
|
| Q |
107 |
acgtggaaa |
115 |
Q |
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||||||||| |
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| T |
55692195 |
acgtggaaa |
55692203 |
T |
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