View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_106 (Length: 316)

Name: NF20633_low_106
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_106
NF20633_low_106
[»] chr8 (1 HSPs)
chr8 (24-316)||(33203121-33203413)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 24 - 316
Target Start/End: Original strand, 33203121 - 33203413
Alignment:
Q  24 gttgtgctacgaaccgaggtccgttctcgagctttgtcgtagccctagcccagaaaagaaaccatctcaacaagaacaagaacataatccagaagtggaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33203121 gttgtgctacgaaccgaggtccgttctcgagctttgtcgtagccctagcccagaaaagaaaccatctcaacaagaacaagaacataatccagaagtggaa 33203220  T
Q  124 caagaggatcatgcttccttgccaaatttggattggtgggattccatcatgaaagatttaggtttacaagacgactcttcaactcccataatacccctct 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33203221 caagaggatcatgcttccttgccaaatttggattggtgggattccatcatgaaagatttaggtttacaagacgactcttcaactcccataatacccctct 33203320  T
Q  224 tgaaaaacaccaataatacctcagaaatttaccctaacccttctcaagatcaatttgatcaaactcaagacttcacttctctgtcagatattt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33203321 tgaaaaacaccaataatacctcagaaatttaccctaacccttctcaagatcaatttgatcaaactcaagacttcacttctctgtcagatattt 33203413  T

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