View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_107 (Length: 314)
Name: NF20633_low_107
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_107 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 42846457 - 42846215
Alignment:
| Q |
19 |
caactttcttgagttcgtgcaacaaagatatttttggtagtttgtgattaatatattcaatgataacttgtaatataaatgcctatgtaattttgaagat |
118 |
Q |
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| T |
42846457 |
caactttcttgagttcgtgcaacaaagatatttttggtagtttgtgattaatatattcaatgataacttgtaa-----atgcctatgtaattttgaagat |
42846363 |
T |
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| Q |
119 |
attgataggttattttgtgactattcacgcccacgttattttttgaattcgcagtgatagctttttgaataattttgaagatattgattgtaattttgaa |
218 |
Q |
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| T |
42846362 |
attgat-ggttattttgtgactattcacgcccacgttattttttgaattcgcagtgatagctttttgaataattttgaagatattgattgtaattttgaa |
42846264 |
T |
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| Q |
219 |
aatgcagagtttggtttacttgtgatgagacatgagtttgaccaatatc |
267 |
Q |
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| T |
42846263 |
aatgcagagtttggtttacttgtgatgagacatgagtttgaccaatatc |
42846215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 313
Target Start/End: Complemental strand, 42825581 - 42825430
Alignment:
| Q |
157 |
ttttttgaattcgcagtgatagctttttgaataattttgaagatattgattgtaattttgaaaatgcagagtttggtttacttgtgatgagacatgagtt |
256 |
Q |
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| T |
42825581 |
ttttttgaattcacagtgatagcttttgggatacttttgatgaaacag----taattttgaaaatgcagagtttggttttcttgttatgaggcatgagtt |
42825486 |
T |
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| Q |
257 |
tgaccaatatctaaagggaaatgatccagaatgtaacgaattgggagtggtccctcg |
313 |
Q |
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| T |
42825485 |
tgaccagtatccaaaggg-catgatccggaatgtggagaattgggagtggttcctcg |
42825430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 314
Target Start/End: Complemental strand, 42846217 - 42846183
Alignment:
| Q |
280 |
atccagaatgtaacgaattgggagtggtccctcgc |
314 |
Q |
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| T |
42846217 |
atccagaatgtaacgaattgggagtggtccctcgc |
42846183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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