View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_11 (Length: 672)

Name: NF20633_low_11
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_11
NF20633_low_11
[»] chr2 (13 HSPs)
chr2 (11-655)||(13794229-13794873)
chr2 (173-295)||(37185396-37185517)
chr2 (173-374)||(28699704-28699919)
chr2 (173-295)||(44900139-44900260)
chr2 (198-295)||(2548487-2548583)
chr2 (213-295)||(13515976-13516057)
chr2 (293-374)||(2548392-2548473)
chr2 (317-374)||(7395295-7395352)
chr2 (317-374)||(9001815-9001872)
chr2 (190-251)||(10291716-10291777)
chr2 (179-228)||(13305056-13305105)
chr2 (290-371)||(31753021-31753102)
chr2 (332-372)||(10291580-10291620)
[»] chr4 (7 HSPs)
chr4 (209-374)||(49022586-49022750)
chr4 (212-295)||(12195622-12195704)
chr4 (316-374)||(12195527-12195585)
chr4 (173-251)||(12194818-12194896)
chr4 (332-374)||(34050628-34050670)
chr4 (317-378)||(29724932-29724993)
chr4 (325-374)||(50051334-50051383)
[»] chr8 (7 HSPs)
chr8 (183-292)||(17465978-17466086)
chr8 (173-251)||(34240824-34240902)
chr8 (290-374)||(24118780-24118864)
chr8 (201-295)||(24115237-24115330)
chr8 (317-374)||(5009891-5009948)
chr8 (315-376)||(30997161-30997222)
chr8 (290-374)||(38667755-38667839)
[»] chr1 (4 HSPs)
chr1 (332-374)||(22224720-22224762)
chr1 (290-371)||(3089045-3089126)
chr1 (211-291)||(22224585-22224664)
chr1 (292-374)||(51183845-51183927)
[»] chr7 (5 HSPs)
chr7 (315-372)||(2591962-2592019)
chr7 (315-366)||(10302125-10302176)
chr7 (214-291)||(2591847-2591923)
chr7 (317-374)||(5332786-5332843)
chr7 (317-374)||(15828725-15828782)
[»] chr6 (6 HSPs)
chr6 (215-295)||(14510226-14510305)
chr6 (330-374)||(28478113-28478157)
chr6 (330-374)||(29790566-29790610)
chr6 (291-374)||(14510131-14510214)
chr6 (184-251)||(21384162-21384229)
chr6 (182-295)||(10345022-10345134)
[»] chr3 (6 HSPs)
chr3 (200-251)||(7434624-7434675)
chr3 (173-295)||(32889608-32889729)
chr3 (317-374)||(19777514-19777571)
chr3 (317-374)||(19789815-19789872)
chr3 (317-374)||(19803365-19803422)
chr3 (290-374)||(7770665-7770749)
[»] scaffold0272 (1 HSPs)
scaffold0272 (317-374)||(4767-4825)
[»] chr5 (2 HSPs)
chr5 (198-292)||(16696100-16696193)
chr5 (317-374)||(35415487-35415544)
[»] scaffold0010 (1 HSPs)
scaffold0010 (317-374)||(245006-245063)


Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 11 - 655
Target Start/End: Original strand, 13794229 - 13794873
Alignment:
Q  11 ttatacttcaaattataaatggtcaacaatgttctaagttcgataaaatcacgaccgttcaattttagtttctatnnnnnnntatttcattttccaacga 110  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  13794229 ttatacttcaaattataaatggtcaatattgttctaagttcgataaaatcacgaccgttcaattttagtttctataaaaaaatatttcattttccaacga 13794328  T
Q  111 aggttagtgcagtgagtacaatattagaaacaatggttagtctgtttatgtcatacctttagaagaggggcatttataaccttttgagggcttgtttccg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13794329 aggttagtgcagtgagtacaatattagaaacaatggttagtctgtttatgtcatacctttagaagaggggtatttataaccttttgagggcttgtttccg 13794428  T
Q  211 cgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggcgcctaggccttaggagcca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13794429 cgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggcgcctaggccttaggagccg 13794528  T
Q  311 ttacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtccagttaagtacaacggaagatgttagactcacatgaca 410  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13794529 ttacggagggcgcctaaacccttctggagggcgtttgagcccttaggaatatattgacggtccagttaagtacaacggaagatgttagactcacatgaca 13794628  T
Q  411 aactaatgttctaatttcaactgagagaaatacacatatttagttcataacacaactcagatagaattatctccgacaaagagatatatgagaaacatgt 510  Q
    |||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  13794629 aactaatgttctaatttcaactgagaaagattcacatatttagttcataacacaactcagatagaattatctccaacgaagagatatatgagaaacatgt 13794728  T
Q  511 ttaactcaaaataatttcaaaattataaaatattaaaatcactgtaacaatcgaattatgaatgatcgtgattttatagagattaaaaacatgtttaact 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13794729 ttaactcaaaataatttcaaaattataaaatattaaaatcactgtaacaatcgaattatgaatgatcgtgattttatagagactaaaaacatgtttaact 13794828  T
Q  611 caaaataatgaacattgtaccgaaaaaagacgatgaacttacact 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13794829 caaaataatgaacattgtaccgaaaaaagacgatgaacttacact 13794873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 173 - 295
Target Start/End: Original strand, 37185396 - 37185517
Alignment:
Q  173 aagaggggcatttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttct 272  Q
    |||||||| ||||||| || ||| | |||||||||   |||||||||||||||||| |||||| | |||||||||||| |||||||||||| ||||||||    
T  37185396 aagaggggtatttatagccctttcaaggcttgtttttacgtgacttaagccccaagcaagctgggttttaagtctttt-tactaagctctagatacttct 37185494  T
Q  273 agaagctagctgaggcggcgcct 295  Q
    ||||||||| |||||||||||||    
T  37185495 agaagctagttgaggcggcgcct 37185517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 173 - 374
Target Start/End: Original strand, 28699704 - 28699919
Alignment:
Q  173 aagaggggcatttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttct 272  Q
    |||||||| ||||||| || |||| | |||||||| ||||||||||||||| |||| |||||| || |||||| |||| |||||||||||| || |||||    
T  28699704 aagaggggtatttatagccctttgtgtgcttgttttcgcgtgacttaagccacaagcaagctg-gccttaagtatttt-tactaagctctagatgcttct 28699801  T
Q  273 agaagctagctgaggcg----------------gcgcctaggccttaggagccattacggagggcgcttaaacccttctagagggtgtttgagcccttag 356  Q
    ||||||||| ||||| |                |||||||||||| ||||||| ||  ||||||||| ||| || ||||||||||  || ||||||||||    
T  28699802 agaagctagatgaggtggcgcctctgggagggcgcgcctaggcctcaggagcccttctggagggcgcctaagcctttctagagggcattcgagcccttag 28699901  T
Q  357 gaatatattgacggtcca 374  Q
    ||||||||||||||||||    
T  28699902 gaatatattgacggtcca 28699919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 295
Target Start/End: Original strand, 44900139 - 44900260
Alignment:
Q  173 aagaggggcatttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttct 272  Q
    |||||||| |||||||||| |||  |||||||||| || |||||||||| |||||| |||||  || ||||||| |||| |||| |||||| || |||||    
T  44900139 aagaggggtatttataaccctttatgggcttgttttcgtgtgacttaagtcccaagcaagcttggccttaagtcatttt-actatgctctagatgcttct 44900237  T
Q  273 agaagctagctgaggcggcgcct 295  Q
    ||||||||  |||||||||||||    
T  44900238 agaagctaattgaggcggcgcct 44900260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 2548583 - 2548487
Alignment:
Q  198 gggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggcgcct 295  Q
    |||||||||| | ||| ||||  |||||||| |||||| || ||| |||||||| ||||||||||| || ||||||||||| || |||||||||||||    
T  2548583 gggcttgttttcacgtaacttgtgccccaagcaagctgggccttatgtcttttt-actaagctctagatgcttctagaagcaagttgaggcggcgcct 2548487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 13515976 - 13516057
Alignment:
Q  213 tgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggcgcct 295  Q
    |||||||||||||||| ||| || |||||||||| |||||||||||||||| || ||| |||||  ||| |||| ||||||||    
T  13515976 tgacttaagccccaagaaagttgggctttaagtc-tttttactaagctctagatgcttttagaaattagttgagacggcgcct 13516057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 374
Target Start/End: Complemental strand, 2548473 - 2548392
Alignment:
Q  293 cctaggccttaggagccattacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||||| ||||||| ||  ||||||||||| | || ||||||| ||  |||||||||||||||||||| ||| ||||||    
T  2548473 cctaggcctcaggagccgttctggagggcgcttgagcctttctagaaggcatttgagcccttaggaatatactgatggtcca 2548392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 7395295 - 7395352
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  7395295 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 7395352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 9001872 - 9001815
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  9001872 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 9001815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 10291777 - 10291716
Alignment:
Q  190 ccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttt 251  Q
    ||||||| || |||||||  ||| ||||||||||| ||| |||||| |||||||||||||||    
T  10291777 ccttttgtggacttgttttagcgcgacttaagccctaagcaagctgggctttaagtcttttt 10291716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 13305056 - 13305105
Alignment:
Q  179 ggcatttataaccttttgagggcttgtttccgcgtgacttaagccccaag 228  Q
    |||||||||| || |||| |||||||||| ||||||||||||||| ||||    
T  13305056 ggcatttatagccctttgtgggcttgttttcgcgtgacttaagcctcaag 13305105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 31753102 - 31753021
Alignment:
Q  290 gcgcctaggccttaggagccattacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggt 371  Q
    |||||||||||||  ||||| ||| ||||||| | | | || ||||||||||  || ||||| |||||||||||||||||||    
T  31753102 gcgcctaggccttgtgagcccttatggagggctccttagcctttctagagggcattcgagcctttaggaatatattgacggt 31753021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 10291620 - 10291580
Alignment:
Q  332 ttctagagggtgtttgagcccttaggaatatattgacggtc 372  Q
    ||||||||||| |||  ||||||||||||||||||||||||    
T  10291620 ttctagagggtttttaggcccttaggaatatattgacggtc 10291580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 209 - 374
Target Start/End: Complemental strand, 49022750 - 49022586
Alignment:
Q  209 cgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggcgcctaggccttaggagc 308  Q
    |||||||||||||| ||||  ||| || || ||||||| |||| || |||||||| || |||||||||| ||| | ||| |||||||| |||||||||||    
T  49022750 cgcgtgacttaagctccaaataagttgggccttaagtcatttt-accaagctctagatgcttctagaagttagttaaggtggcgcctaagccttaggagc 49022652  T
Q  309 cattacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    | ||  |||||||||||||||| ||||||||||  |||  ||||||| ||||||||||||||||||    
T  49022651 ccttctggagggcgcttaaacctttctagagggcttttaggcccttaagaatatattgacggtcca 49022586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 12195704 - 12195622
Alignment:
Q  212 gtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggcgcct 295  Q
    ||||||||||||||||| ||| || | ||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||    
T  12195704 gtgacttaagccccaagcaagttgggttttaagt-ttttttactaagctctagatgcttctagaagctagttgaggcggcgcct 12195622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 12195585 - 12195527
Alignment:
Q  316 gagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    |||||||| ||| || || |||||||| |||||||||||||||||||||||||||||||    
T  12195585 gagggcgcctaagcctttatagagggtatttgagcccttaggaatatattgacggtcca 12195527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 12194896 - 12194818
Alignment:
Q  173 aagaggggcatttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttt 251  Q
    |||||| | ||||||| || | || |||||||||| | |||| ||||||||||||| ||||||||| ||||||||||||    
T  12194896 aagaggtgtatttatagccctctgtgggcttgttttctcgtggcttaagccccaagtaagctgcgccttaagtcttttt 12194818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 34050628 - 34050670
Alignment:
Q  332 ttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    |||||||| |||||||| || ||||||||||||||||||||||    
T  34050628 ttctagagagtgtttgatcctttaggaatatattgacggtcca 34050670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 29724932 - 29724993
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtccagtta 378  Q
    ||||||| ||| ||||||| |||||  ||| |||||||||||||||  ||||||||||||||    
T  29724932 agggcgcctaagcccttctggagggcttttaagcccttaggaatattatgacggtccagtta 29724993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 50051334 - 50051383
Alignment:
Q  325 taaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    |||||| ||||||||||  |||  ||||||||||||||||||||||||||    
T  50051334 taaacctttctagagggattttaggcccttaggaatatattgacggtcca 50051383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 183 - 292
Target Start/End: Complemental strand, 17466086 - 17465978
Alignment:
Q  183 tttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagc 282  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||||| |||||| |||||| ||| |||||||  || |||| || |||||| ||||| ||    
T  17466086 tttataactttttgtgggcttgtttcagcgtgacttaagccccaagcaagctgggctttaggtc-tttttacccagttctagatgcttctataagctggc 17465988  T
Q  283 tgaggcggcg 292  Q
    | ||||||||    
T  17465987 taaggcggcg 17465978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 34240902 - 34240824
Alignment:
Q  173 aagaggggcatttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttt 251  Q
    |||||||| ||||||| || |||| |||||||||||| |||||||||||||||||  || ||| |||||| ||||||||    
T  34240902 aagaggggtatttatagccctttgtgggcttgtttccacgtgacttaagccccaaccaatctgggctttaggtcttttt 34240824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 24118864 - 24118780
Alignment:
Q  290 gcgcctaggccttaggagccattacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    |||||||||| | | ||||| ||| ||||||||  ||| || ||||||||||| || ||||||||||||||||||||| ||||||    
T  24118864 gcgcctaggcttcatgagcctttatggagggcgtgtaagcctttctagagggtattcgagcccttaggaatatattgatggtcca 24118780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 24115330 - 24115237
Alignment:
Q  201 cttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggcgcct 295  Q
    ||||||| | |||||||||||||  ||| |||||| |  ||||||||| || ||||||||||| || |||||||||||||| ||||| |||||||    
T  24115330 cttgttttctcgtgacttaagccttaagtaagctgggtcttaagtcttatt-actaagctctagatgcttctagaagctagttgaggtggcgcct 24115237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 5009891 - 5009948
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  5009891 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 5009948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 30997161 - 30997222
Alignment:
Q  315 ggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtccagt 376  Q
    |||||||||  || || ||||||||||  || ||||||||||||||||||| ||||||||||    
T  30997161 ggagggcgccaaagcctttctagagggcattcgagcccttaggaatatattaacggtccagt 30997222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 38667839 - 38667755
Alignment:
Q  290 gcgcctaggccttaggagccattacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||| |||||| | ||||| ||  ||||||||| ||| || ||||||||||  || || ||||||||||||||| |||||||||    
T  38667839 gcgccaaggcctcatgagcccttctggagggcgcataagcctttctagagggcattcgaacccttaggaatatatggacggtcca 38667755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 22224720 - 22224762
Alignment:
Q  332 ttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  22224720 ttctagagggtatttgagcccttaggaatatattgacggtcca 22224762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 3089126 - 3089045
Alignment:
Q  290 gcgcctaggccttaggagccattacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggt 371  Q
    |||||||||||||||||||| || |||||||||| ||| || ||||||| ||  ||| ||||||||| |||||||| |||||    
T  3089126 gcgcctaggccttaggagcccttccggagggcgcctaagcctttctagaaggcattttagcccttagaaatatatttacggt 3089045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 22224585 - 22224664
Alignment:
Q  211 cgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggc 291  Q
    |||||||||||| ||||| ||| || || ||||||||||| |||||||||||| || |||||||||||||| |||| ||||    
T  22224585 cgtgacttaagctccaagcaagttgggccttaagtctttt-tactaagctctagatgcttctagaagctagttgagccggc 22224664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 51183845 - 51183927
Alignment:
Q  292 gcctaggccttaggagccattacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    |||||||||||| ||| ||||  | |||||||  ||||| ||||||||||| || ||||||||| ||||||||||||| ||||    
T  51183845 gcctaggccttacgagtcattctgaagggcgcccaaacctttctagagggtattcgagcccttaagaatatattgacgatcca 51183927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 2591962 - 2592019
Alignment:
Q  315 ggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtc 372  Q
    ||||| ||| ||| || ||||||||||| |||||||||||||||||||||||||||||    
T  2591962 ggaggacgcctaagcctttctagagggtatttgagcccttaggaatatattgacggtc 2592019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 10302125 - 10302176
Alignment:
Q  315 ggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattg 366  Q
    ||||| ||| ||| || ||||||||||| |||||||||||||||||||||||    
T  10302125 ggaggacgcctaagcctttctagagggtatttgagcccttaggaatatattg 10302176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 2591847 - 2591923
Alignment:
Q  214 gacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggc 291  Q
    ||||||||| ||||  ||| || || ||||||||||| |||||||||||| || ||| |||||||||| |||||||||    
T  2591847 gacttaagctccaaacaagttgtgccttaagtctttt-tactaagctctagatgcttttagaagctagttgaggcggc 2591923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 5332786 - 5332843
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  5332786 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 5332843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 15828725 - 15828782
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  15828725 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 15828782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 14510305 - 14510226
Alignment:
Q  215 acttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggcgcct 295  Q
    |||||||||||||| || ||| ||  || |||||||| ||||||||||| || |||||||||||||| |||||||||||||    
T  14510305 acttaagccccaagcaaactgggccctatgtcttttt-actaagctctagatgcttctagaagctagttgaggcggcgcct 14510226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 28478157 - 28478113
Alignment:
Q  330 ccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    |||||||||||||  || |||||||||||||||||||||||||||    
T  28478157 ccttctagagggttcttaagcccttaggaatatattgacggtcca 28478113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 29790610 - 29790566
Alignment:
Q  330 ccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    |||||||||||||  || |||||||||||||||||||||||||||    
T  29790610 ccttctagagggttcttaagcccttaggaatatattgacggtcca 29790566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 14510214 - 14510131
Alignment:
Q  291 cgcctaggccttaggagccattacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||||||| ||||||| ||| ||||||||||||| || ||||| | ||  || |||||||||| |||||| | ||||||||    
T  14510214 cgcctaggcctcaggagcccttatggagggcgcttaagcctttctaaaaggcattcgagcccttagaaatataatcacggtcca 14510131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 21384162 - 21384229
Alignment:
Q  184 ttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttt 251  Q
    ||||| ||||||||||||||||||   || ||||||||||||||| ||| || |||||| ||||||||    
T  21384162 ttatagccttttgagggcttgttttaacgcgacttaagccccaagcaagatgagctttatgtcttttt 21384229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 10345022 - 10345134
Alignment:
Q  182 atttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctag 281  Q
    |||||||| | |||| ||||||||||   | | |||||| || |||| |||||| || |||||| |||| |||||||||||| || |||||||||| |||    
T  10345022 atttataatcctttgtgggcttgtttttacctaacttaatccacaagcaagctgggccttaagtatttt-tactaagctctagatgcttctagaaggtag 10345120  T
Q  282 ctgaggcggcgcct 295  Q
     |||| ||||||||    
T  10345121 ttgagacggcgcct 10345134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 7434675 - 7434624
Alignment:
Q  200 gcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttt 251  Q
    ||||| ||| ||||||||||||||||||| |||||| |||||| ||||||||    
T  7434675 gcttgcttcagcgtgacttaagccccaagcaagctgggctttaggtcttttt 7434624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 295
Target Start/End: Complemental strand, 32889729 - 32889608
Alignment:
Q  173 aagaggggcatttataaccttttgagggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttct 272  Q
    |||||||| ||||||| || |||| | ||||||||  |||| |||||||| | ||| |||||| |  ||||||| |||| || |||||||| || |||||    
T  32889729 aagaggggtatttatagccctttgtgagcttgtttttgcgtaacttaagctcaaagaaagctgggtcttaagtcatttt-accaagctctagatgcttct 32889631  T
Q  273 agaagctagctgaggcggcgcct 295  Q
    ||||||| | | |||||||||||    
T  32889630 agaagctggttaaggcggcgcct 32889608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 19777514 - 19777571
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  19777514 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 19777571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 19789872 - 19789815
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  19789872 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 19789815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 19803365 - 19803422
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  19803365 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 19803422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 7770665 - 7770749
Alignment:
Q  290 gcgcctaggccttaggagccattacggagggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    |||||| || |||||||||| ||  ||||||||||||  || ||||| || || |||  |||||||| |||||||||||||||||    
T  7770665 gcgcctgggtcttaggagcccttttggagggcgcttaggcctttctaaagagtttttaggcccttagaaatatattgacggtcca 7770749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 4825 - 4767
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatat-tgacggtcca 374  Q
    ||||||| |||||||||||||||||  ||| ||||||||||||||| | ||||||||||    
T  4825 agggcgcctaaacccttctagagggcttttaagcccttaggaatatttatgacggtcca 4767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 16696193 - 16696100
Alignment:
Q  198 gggcttgtttccgcgtgacttaagccccaaggaagctgcgctttaagtcttttttactaagctctaaatacttctagaagctagctgaggcggcg 292  Q
    ||||||||||  ||||||||||||| ||||| |||||| |||||| |||||||| |||    |||| ||  ||||||||||| ||||||||||||    
T  16696193 gggcttgttttagcgtgacttaagctccaagcaagctgggctttaggtcttttt-acttgattctagatgtttctagaagctggctgaggcggcg 16696100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 35415544 - 35415487
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  35415544 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 35415487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 245063 - 245006
Alignment:
Q  317 agggcgcttaaacccttctagagggtgtttgagcccttaggaatatattgacggtcca 374  Q
    ||||||| ||||||||||| |||||  ||| |||||||||||||||  ||||||||||    
T  245063 agggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacggtcca 245006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University