View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_110 (Length: 310)
Name: NF20633_low_110
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 5122516 - 5122797
Alignment:
| Q |
16 |
acacccctaatataaattataattcatatgatagaggtataaacaacnnnnnnnntgttaatgtaacattaaaatttgaaaatgaacgataaatatgaac |
115 |
Q |
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| T |
5122516 |
acacccctaatataaattataattcatatgatagaggtataaacaacaaaaaaa-tgttaatgtaacattaaaatttgaaaatgaacgataaatatgaac |
5122614 |
T |
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| Q |
116 |
atannnnnnnn--cattctaaaaaccaactattaaaaaagaataaggggagtattaggttgttgcattaagatatcctagagttt--aaaacaacttaat |
211 |
Q |
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| T |
5122615 |
atatattttttttctttctaaaaaccaactattaaaaaagaataaggggaatattaggttgttgcattaagatatcctagagttttaaaaacaacttaat |
5122714 |
T |
|
| Q |
212 |
gatttccacaagaaaaaacaacaacttaatgacatataataagctattgtttttaaaattcttggataaatttatgaagtaatt |
295 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
5122715 |
gatttccacaagaaaaaacaactacttaatgacatataataagctattgttttt-aaactcttggataaatttatgaagtaatt |
5122797 |
T |
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