View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_112 (Length: 309)
Name: NF20633_low_112
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 52477112 - 52477268
Alignment:
| Q |
1 |
agaaaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatgg |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52477112 |
agaaaaccctaatattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatgg |
52477211 |
T |
|
| Q |
101 |
attgtggactgagtgagttagaatctgagcaattgtagcaccgattggaactattgg |
157 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
52477212 |
attgtggactgagtgagttggaaactgagcaattgtagcaccgattggaactattgg |
52477268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 2302006 - 2302135
Alignment:
| Q |
4 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggatt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2302006 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggatt |
2302105 |
T |
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| Q |
104 |
gtggactgagtgagttagaatctgagcaat |
133 |
Q |
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| T |
2302106 |
gtggactgagtgagttggaatctgagcaat |
2302135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 52477243 - 52477330
Alignment:
| Q |
203 |
attgtagcaccaattggaactattggaccgattgtgagaagctaggtttggaagtgacaagaatctgaatcgagtgtgtacgctaggt |
290 |
Q |
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| T |
52477243 |
attgtagcaccgattggaactattggaccgattgtgagaagctaggtttggaagtgacaagaatatgaatcgagtgtgtaggctaggt |
52477330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 40067175 - 40067019
Alignment:
| Q |
1 |
agaaaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatgg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40067175 |
agaaaaccctaatattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtgattcactaaccttttagggcaataaaatcaacggtgatgg |
40067076 |
T |
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| Q |
101 |
attgtggactgagtgagttagaatctgagcaattgtagcaccgattggaactattgg |
157 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
40067075 |
attgtggactgagtgagttggaaactgagcaattgtagcaccgattggaactattgg |
40067019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 27513170 - 27513285
Alignment:
| Q |
18 |
taaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggattgtggactgagtgag |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| || |||||||||||| |||||||||||| |
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| T |
27513170 |
taaatcacaaattagcagcaataaaatcaatttagcaaaggtaattcactaacctttcagagcaataaaattaatggtgatggattgaggactgagtgag |
27513269 |
T |
|
| Q |
118 |
ttagaatctgagcaat |
133 |
Q |
| |
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|| ||||||||||||| |
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| T |
27513270 |
ttggaatctgagcaat |
27513285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 40067044 - 40066990
Alignment:
| Q |
203 |
attgtagcaccaattggaactattggaccgattgtgagaagctaggtttggaagt |
257 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40067044 |
attgtagcaccgattggaactattggaccgattgtgagaagctaggtttggaagt |
40066990 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15328561 - 15328432
Alignment:
| Q |
4 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggatt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
15328561 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtaattcactaacctttcagagcaataaaatcaatggtgatggatt |
15328462 |
T |
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| Q |
104 |
gtggactgagtgagttagaatctgagcaat |
133 |
Q |
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| T |
15328461 |
ggggactgagtgagttggaatctgagcaat |
15328432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15508930 - 15508801
Alignment:
| Q |
4 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggatt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
15508930 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtaattcactaacctttcagagcaataaaatcaatggtgatggatt |
15508831 |
T |
|
| Q |
104 |
gtggactgagtgagttagaatctgagcaat |
133 |
Q |
| |
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| |||||||||||||| ||||||||||||| |
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| T |
15508830 |
ggggactgagtgagttggaatctgagcaat |
15508801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 1390859 - 1390771
Alignment:
| Q |
10 |
taaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| ||||||| ||| |||||| |
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| T |
1390859 |
taaaattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtggttcactaacctttcagagtaataaaaccaaaggtgat |
1390771 |
T |
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