View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_low_116 (Length: 304)
Name: NF20633_low_116
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_116 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 38226380 - 38226643
Alignment:
| Q |
20 |
ttaacaacacacaaattgatgaaagttgattgggtcactaatacgtttgtttgtcaaaataaggcatatatgtaaaagcatcgaaatgaaggtactgatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38226380 |
ttaacaacacacaaattgatgaaagttgattgggtcactaatatgtttgtttgtcaaaatgaggcatatatgtaaaagcatcacaatgaaggtactgatc |
38226479 |
T |
|
| Q |
120 |
cacttgagcactttgaaacacaatctaaccgtaaaaatatatctaacaacggtcacaggttatttacacagctatgcatggaatagtaacatatgccgtc |
219 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38226480 |
cacgtgagcacattgaaacacaatctaaccgtaaaaatatatctaacaacggtcacaggttatttacacagctatgcatggaatagtagcatatgccgtc |
38226579 |
T |
|
| Q |
220 |
gattactttaaatccaaggaaaggaaggaaatcaaaagtgaaaactcatttgaaattaagggagagaca |
288 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
38226580 |
gattactttaaatcc-----aaggaaggaaatcaaaactgaaaactcctttgaaattaagggagagaca |
38226643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 37936957 - 37937081
Alignment:
| Q |
106 |
tgaaggtactgatccacttgagcactttgaaacacaatctaaccgtaaaaatatatctaacaacggtcacaggttatttacacagctatgcatggaatag |
205 |
Q |
| |
|
||||||||| |||||| | ||| ||||||||||||||||| | || ||||||| |||||| ||||||| ||| |||||||| ||||||| || ||| |
|
|
| T |
37936957 |
tgaaggtaccgatccaagttagcgctttgaaacacaatctagctgtcaaaatatttctaac---ggtcacaagttttttacacaactatgcacagattag |
37937053 |
T |
|
| Q |
206 |
taacatatgccgtcgattactttaaatc |
233 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |
|
|
| T |
37937054 |
taacatatgccgtcaattgctttaaatc |
37937081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University