View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_121 (Length: 295)
Name: NF20633_low_121
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_121 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 275
Target Start/End: Complemental strand, 36320802 - 36320530
Alignment:
| Q |
3 |
cagagaaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36320802 |
cagagaaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattat |
36320703 |
T |
|
| Q |
103 |
tgataaatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaa |
202 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
36320702 |
tgataaatgtcctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttgacgaaaaggtgcattgaccagatcaaggatttgcaa |
36320603 |
T |
|
| Q |
203 |
ctgtcatatcgttataaatgtaaacaaatgagacaactattatgatgatcatgcttctttttggggacgatat |
275 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36320602 |
ctgtcatatcgttataaatgtaaacaaatgagacaactattatgatgatcatgcttctttttggggacgatat |
36320530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 36327641 - 36327431
Alignment:
| Q |
8 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
107 |
Q |
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||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||||||||| |||||||||||||| |
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| T |
36327641 |
aaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgata |
36327542 |
T |
|
| Q |
108 |
aatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactgtc |
207 |
Q |
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| T |
36327541 |
gctgccctcttcttgagtctcttgacattagtgattgtcattatttgactgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcc |
36327442 |
T |
|
| Q |
208 |
atatcgttata |
218 |
Q |
| |
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| |||||||| |
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| T |
36327441 |
aagtcgttata |
36327431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 36336170 - 36335967
Alignment:
| Q |
8 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
107 |
Q |
| |
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||||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| ||||||||||||| |
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| T |
36336170 |
aaaatggcgtttcttattgctgaaacaatgcctggtctatgccatcttgatatgagaggacacaagctcactgaacttggcgtgctcgccattattgata |
36336071 |
T |
|
| Q |
108 |
aatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactgtc |
207 |
Q |
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|||||||| ||||||||| ||||||||||||| ||||| | |||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| | |
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| T |
36336070 |
aatgccctcttcttgaatatcttgacattagtttttgtcttaatttgaatgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcc |
36335971 |
T |
|
| Q |
208 |
atat |
211 |
Q |
| |
|
|||| |
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|
| T |
36335970 |
atat |
36335967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 36325777 - 36325512
Alignment:
| Q |
8 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
107 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |
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| T |
36325777 |
aaaatggcttttgttattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcagtgaacttcgtgtgctcgccataattgata |
36325678 |
T |
|
| Q |
108 |
aatgccctgttcttgaatctcttgacattagtgattg----tcattatttga--gtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgca |
201 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||| ||||| | ||| ||||||||| ||||| ||||| || ||||||| |||||||| |
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| T |
36325677 |
aatgccctcttcttgaatctcttgacattagtgtttgtctttcattgtatgaagatgaagatttgcataaaagttgcatcgacaagatcaatgatttgca |
36325578 |
T |
|
| Q |
202 |
actgtcatatcgttataaatgtaaacaaatgagacaactattatgatgatcatgcttctttttggg |
267 |
Q |
| |
|
|||| ||||| |||||| | ||||| ||||||||||||| ||||| ||||||||||||||||||| |
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| T |
36325577 |
actgacatattgttatacttataaaccaatgagacaactaatatgacgatcatgcttctttttggg |
36325512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 36333466 - 36333309
Alignment:
| Q |
8 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||||||||| |
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| T |
36333466 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcactcaacttggtgtgctcgccattattgata |
36333367 |
T |
|
| Q |
108 |
aatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagattt |
165 |
Q |
| |
|
|| ||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
36333366 |
aaggccctcttcttgagtctcttgacattcgtgattgtcattatttgaatgaagattt |
36333309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 36313399 - 36313206
Alignment:
| Q |
8 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
107 |
Q |
| |
|
|||| ||| |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |
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| T |
36313399 |
aaaacggcacttgttattgctgaaacaatgcctggtctacgccatcttgatatgaaaggacacaagctcactgaacttggtgtgctcgccattattgata |
36313300 |
T |
|
| Q |
108 |
aatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgca |
201 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||||||||| ||||| ||| |||||| |||||||| ||||| || |||||||| |
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| T |
36313299 |
aatgccctcttcttgagtctcttgacattcgtgattgtcattatttgaatgaaggtttggagaaaagctgcattgatcagattaatgatttgca |
36313206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 30621598 - 30621491
Alignment:
| Q |
30 |
aaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgccctgttcttgaatctct |
129 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| | ||| || |||||||||| |||| ||| ||| ||| ||||| ||||||| ||||||||||||| |
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|
| T |
30621598 |
aaacaatgcctgggctacgccatcttgatattcatggaaaccctctcagtgaagttgggttgcttgctattcttgatggatgccctcttcttgaatctct |
30621499 |
T |
|
| Q |
130 |
tgacatta |
137 |
Q |
| |
|
||||||| |
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|
| T |
30621498 |
cgacatta |
30621491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 36309131 - 36309078
Alignment:
| Q |
152 |
ttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactg |
205 |
Q |
| |
|
||||||||| ||| | ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
36309131 |
ttgagtgaaagtttgaagaaaaggtgcattgatcagatcaatgatttgcaactg |
36309078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 16053090 - 16052979
Alignment:
| Q |
22 |
tattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgccctgttctt |
121 |
Q |
| |
|
||||||||| |||||| || ||||||| |||||||||| || ||| |||| |||| | | |||| ||| |||||| |||||||||||||| ||||| |
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|
| T |
16053090 |
tattgctgatacgatgactaatctatgctatcttgatatcaagggagacaacctcactaatgatggtttgctcgccattcttgataaatgcccttttctt |
16052991 |
T |
|
| Q |
122 |
gaatctcttgac |
133 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16052990 |
gaatctcttgac |
16052979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 42563630 - 42563569
Alignment:
| Q |
11 |
atggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaa |
72 |
Q |
| |
|
|||||| ||| ||| ||||||| |||| ||||||| |||||||||||||| || |||||||| |
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|
| T |
42563630 |
atggcgtttgttatcgctgaaatgatgtctggtctgtgccatcttgatatcaatggacacaa |
42563569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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