View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_122 (Length: 293)
Name: NF20633_low_122
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_122 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 52082256 - 52082543
Alignment:
| Q |
1 |
aaacatgggaaaagtaaagattgaaatgttgtgatgaagataacatttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
52082256 |
aaacatgggaaaagtaaagattgaaatgttgtgatgaagataacatttcaaataatagttttatcactttcagaatactagaaaacaaggcatccaaggt |
52082355 |
T |
|
| Q |
101 |
tcaataaaggtttccacttgtcgtcactaggacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52082356 |
tcaataaaggtttccacttgtcgtcactaggacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaatt |
52082455 |
T |
|
| Q |
201 |
aacatcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
288 |
Q |
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| T |
52082456 |
aacatcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctct |
52082543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 52092458 - 52092739
Alignment:
| Q |
7 |
gggaaaagtaaagattgaaatgttgtgatgaagataacatttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaata |
106 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52092458 |
gggaaaaatgaagattgaaatgttgtgatgaagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggttcaata |
52092557 |
T |
|
| Q |
107 |
aaggtttccacttgtcgtcactaggacaaaaatgagagggagccataat----ttttctcaatgatgaccttaaaattaccatcaccatccagaaattaa |
202 |
Q |
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| T |
52092558 |
aaggtttccacttgtcgtcact---acaaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaa |
52092654 |
T |
|
| Q |
203 |
catcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
288 |
Q |
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| T |
52092655 |
catcaacacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctct |
52092739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 35901836 - 35901779
Alignment:
| Q |
231 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
288 |
Q |
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| T |
35901836 |
caaatttatctctctcagttgtgtacagttttctatgacttgtctcactcctttctct |
35901779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 288
Target Start/End: Original strand, 1754287 - 1754481
Alignment:
| Q |
94 |
ccatggttcaataaaggtttccacttgtcgtcactaggacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatcc |
193 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||||||| ||||| || ||||| | | || |||||||| ||| |||| | | ||||||||| ||| |
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| T |
1754287 |
ccatgattcaataagggtttccacttgctatcactaggataaaaaccagggggagtcttgatctttctcaacaatggccttgacaataccatcacattcc |
1754386 |
T |
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| Q |
194 |
agaaattaacatcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
288 |
Q |
| |
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| |||| ||||||| | |||||| | ||| | |||| |||||||| |||| |||||||| ||||||||||| ||| |||||||||||||| |
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| T |
1754387 |
ataaatcaacatcaacggccacattgacataatgtcgcaaacttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctct |
1754481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 1528397 - 1528340
Alignment:
| Q |
231 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
288 |
Q |
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||||||||||||||||||| |||||||||||||||| || ||| | ||||| |||||| |
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| T |
1528397 |
caaatttatctctctcagttgtgtgcagttttctacaacttgcatgactccattctct |
1528340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 6006218 - 6006287
Alignment:
| Q |
217 |
ttatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttct |
286 |
Q |
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|||||||||||| ||||||||||||||||| | || ||||||||||||| || ||| ||||||| |||| |
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| T |
6006218 |
ttatgacaatcctgcaaatttatctctctcaattgtttgcagttttctacgacttgcatcactcccttct |
6006287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 266
Target Start/End: Complemental strand, 12120336 - 12120301
Alignment:
| Q |
231 |
caaatttatctctctcagtcgtgtgcagttttctac |
266 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
12120336 |
caaatttatctctctcagttgtgtgcagttttctac |
12120301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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