View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_125 (Length: 288)

Name: NF20633_low_125
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_125
NF20633_low_125
[»] chr4 (7 HSPs)
chr4 (19-270)||(7225129-7225379)
chr4 (111-215)||(8186382-8186486)
chr4 (105-268)||(21833247-21833410)
chr4 (177-235)||(1755548-1755606)
chr4 (104-217)||(1547724-1547837)
chr4 (108-217)||(571256-571365)
chr4 (108-153)||(641933-641978)
[»] chr8 (5 HSPs)
chr8 (108-217)||(32151894-32152003)
chr8 (104-220)||(18314656-18314772)
chr8 (108-214)||(17635680-17635786)
chr8 (104-149)||(17643024-17643069)
chr8 (183-216)||(18318665-18318698)
[»] chr1 (2 HSPs)
chr1 (108-219)||(19467450-19467561)
chr1 (108-217)||(7555124-7555233)
[»] chr6 (2 HSPs)
chr6 (190-236)||(6395545-6395591)
chr6 (108-153)||(7993631-7993676)
[»] chr7 (3 HSPs)
chr7 (108-217)||(7977799-7977908)
chr7 (176-220)||(10169068-10169112)
chr7 (176-220)||(10176593-10176637)
[»] chr3 (1 HSPs)
chr3 (129-236)||(1657474-1657581)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 7225379 - 7225129
Alignment:
Q  19 cagagagattaaccctacggagttttaaaagtgctgatgaaagagcctctactccaccaacaatgtttgtcaaccttccactttgactaaggtcgagttc 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7225379 cagagagattaaccctacggagtttgaaaagtgctgatgaaagagcctctactccaccaacaatgtttgtcaaccttccacgttgactaaggtcgagttc 7225280  T
Q  119 ttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaagttgtaatattttga 218  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  7225279 ttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaataaatg-tggaacatgtgagagaggtcaaagttgtaatattttga 7225181  T
Q  219 gaaagagcttgcaacccacgtgctggaatgatggatttattcgagatattaa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7225180 gaaagagcttgcaacccacgtgctggaatgatggatttattcgagatattaa 7225129  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 8186486 - 8186382
Alignment:
Q  111 tcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaagttgtaa 210  Q
    ||||||||||| || ||||| ||||||| |||||||||||| |||||||||||| ||| |||   |||||||||||||||||| ||||||||||||||||    
T  8186486 tcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaa 8186387  T
Q  211 tattt 215  Q
    |||||    
T  8186386 tattt 8186382  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 268
Target Start/End: Complemental strand, 21833410 - 21833247
Alignment:
Q  105 ctaaggtcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaag 204  Q
    |||| ||||||||||||| |||| |||||||| | | |||||||||||| ||||||| || |||||  |  ||| |||||||| ||||| ||||||||||    
T  21833410 ctaacgtcgagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaattagcaattttggaacaagtgagagaggtcaaag 21833311  T
Q  205 ttgtaatattttgagaaagagcttgcaacccacgtgctggaatgatggatttattcgagatatt 268  Q
    | ||||| ||||| | || | || ||||||||  ||| |||||| ||| ||| || ||||||||    
T  21833310 tagtaatgttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatatt 21833247  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 1755548 - 1755606
Alignment:
Q  177 atgttggaacatgtgagcgaggtcaaagttgtaatattttgagaaagagcttgcaaccc 235  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||    
T  1755548 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaaccc 1755606  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 1547837 - 1547724
Alignment:
Q  104 actaaggtcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaa 203  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||  ||||||||| ||||   |  |    |||||| |||||||||||| || ||||||    
T  1547837 actaaggtcgagttcttcgagaaaagggaaacaatcggcaatgatcaacatgtcaatgctttggggacgggaaatgtgggaacatgtgagagatgtcaaa 1547738  T
Q  204 gttgtaatattttg 217  Q
    |||||||| |||||    
T  1547737 gttgtaatgttttg 1547724  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 217
Target Start/End: Original strand, 571256 - 571365
Alignment:
Q  108 aggtcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaagttg 207  Q
    |||| |||||||||||||||||||||||| |  | |||||| |||| ||| ||| || ||| ||||    ||| ||||||  |||| || ||||||||||    
T  571256 aggtggagttcttcgagcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttg 571355  T
Q  208 taatattttg 217  Q
    ||||||||||    
T  571356 taatattttg 571365  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 641933 - 641978
Alignment:
Q  108 aggtcgagttcttcgagcaaagggaaacaattggcgatgaggaaca 153  Q
    ||||| ||||||||||| ||||||||||||||||| || |||||||    
T  641933 aggtcaagttcttcgagtaaagggaaacaattggcaataaggaaca 641978  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 217
Target Start/End: Original strand, 32151894 - 32152003
Alignment:
Q  108 aggtcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaagttg 207  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||| ||| |||| | |||||||| ||||    ||||| ||||| |||||||||||||    
T  32151894 aggtcaagttcttcgagcaaagggaaacaatcggcaatgaggaacaagtcggtgccattgaaagaataaatacgagaacaagtgagagaggtcaaagttg 32151993  T
Q  208 taatattttg 217  Q
    |||| |||||    
T  32151994 taatgttttg 32152003  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 18314772 - 18314656
Alignment:
Q  104 actaaggtcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaa 203  Q
    |||||||||||||||||||||||||||||||||||  || |||||||| |  ||||||| |  || |||   |||||  ||||||| ||| |||||||||    
T  18314772 actaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatggagagattgaatgtaagaacatgagagtgaggtcaaa 18314673  T
Q  204 gttgtaatattttgaga 220  Q
    |||||||||||||||||    
T  18314672 gttgtaatattttgaga 18314656  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 17635786 - 17635680
Alignment:
Q  108 aggtcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaagttg 207  Q
    ||||| ||||||||||||||||||||||||  |||||||||||||||||||  ||||  || ||    ||||  |||||| ||||| |||||||||||||    
T  17635786 aggtcaagttcttcgagcaaagggaaacaaccggcgatgaggaacatgtcaaagctacggagagtgttaatgcaggaacaagtgagagaggtcaaagttg 17635687  T
Q  208 taatatt 214  Q
    |||||||    
T  17635686 taatatt 17635680  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 17643069 - 17643024
Alignment:
Q  104 actaaggtcgagttcttcgagcaaagggaaacaattggcgatgagg 149  Q
    |||||| ||||||||||| ||||||||||||||||  |||||||||    
T  17643069 actaagatcgagttcttctagcaaagggaaacaatcagcgatgagg 17643024  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 18318698 - 18318665
Alignment:
Q  183 gaacatgtgagcgaggtcaaagttgtaatatttt 216  Q
    ||||||||||| ||||||||||||||||||||||    
T  18318698 gaacatgtgagtgaggtcaaagttgtaatatttt 18318665  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 19467561 - 19467450
Alignment:
Q  108 aggtcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaagttg 207  Q
    |||| |||||||||||||||||| ||||| |  ||||||||||||| ||||||| || |||||     ||||| | |||| ||||| |||||||||||||    
T  19467561 aggttgagttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagttg 19467462  T
Q  208 taatattttgag 219  Q
    ||||||||||||    
T  19467461 taatattttgag 19467450  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 217
Target Start/End: Original strand, 7555124 - 7555233
Alignment:
Q  108 aggtcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaagttg 207  Q
    |||| |||||||||||||||||||||||| |  || ||||| |||| |||| ||||| ||| ||||   || |||||||| ||||| ||||| |||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 7555223  T
Q  208 taatattttg 217  Q
    ||||||||||    
T  7555224 taatattttg 7555233  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 6395545 - 6395591
Alignment:
Q  190 tgagcgaggtcaaagttgtaatattttgagaaagagcttgcaaccca 236  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||    
T  6395545 tgagagaggtcaaagttgtaatattttgggagagagcttgcaaccca 6395591  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 7993676 - 7993631
Alignment:
Q  108 aggtcgagttcttcgagcaaagggaaacaattggcgatgaggaaca 153  Q
    |||| |||||||| ||||||||||||||||||||| ||||| ||||    
T  7993676 aggttgagttctttgagcaaagggaaacaattggcaatgagtaaca 7993631  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 217
Target Start/End: Original strand, 7977799 - 7977908
Alignment:
Q  108 aggtcgagttcttcgagcaaagggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaagttg 207  Q
    |||||||||||||| ||||||||||||||||  || ||||| |||||||   || || | | |||   |||||| |||||| |||| |||||||||||||    
T  7977799 aggtcgagttcttcaagcaaagggaaacaatctgctatgagaaacatgtggttgatattaatagattcaatgttagaacatttgagtgaggtcaaagttg 7977898  T
Q  208 taatattttg 217  Q
     |||||||||    
T  7977899 caatattttg 7977908  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 10169112 - 10169068
Alignment:
Q  176 aatgttggaacatgtgagcgaggtcaaagttgtaatattttgaga 220  Q
    ||||| |||||| ||||| |||||||||||| |||||||||||||    
T  10169112 aatgtcggaacaagtgagagaggtcaaagttctaatattttgaga 10169068  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 10176637 - 10176593
Alignment:
Q  176 aatgttggaacatgtgagcgaggtcaaagttgtaatattttgaga 220  Q
    ||||| |||||| ||||| |||||||||||| |||||||||||||    
T  10176637 aatgtcggaacaagtgagagaggtcaaagttctaatattttgaga 10176593  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 1657474 - 1657581
Alignment:
Q  129 gggaaacaattggcgatgaggaacatgtcagtgctagtgaaagaaaaaatgttggaacatgtgagcgaggtcaaagttgtaatattttgagaaagagctt 228  Q
    ||||||||||  || |||||||||| |||||||| | ||| |||   ||||  |||||| ||||| ||||| |||||| |||| |||||||| | |||||    
T  1657474 gggaaacaatcagcaatgaggaacaggtcagtgcgattgatagattcaatgaaggaacacgtgagagaggttaaagttttaatgttttgagagaaagctt 1657573  T
Q  229 gcaaccca 236  Q
    ||||||||    
T  1657574 gcaaccca 1657581  T

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