View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_13 (Length: 668)

Name: NF20633_low_13
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_13
NF20633_low_13
[»] chr8 (3 HSPs)
chr8 (18-658)||(31944658-31945297)
chr8 (149-306)||(14039296-14039453)
chr8 (149-330)||(18954243-18954424)
[»] chr5 (1 HSPs)
chr5 (136-330)||(8798164-8798358)


Alignment Details
Target: chr8 (Bit Score: 571; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 18 - 658
Target Start/End: Complemental strand, 31945297 - 31944658
Alignment:
Q  18 cagtggaaccaagtggcggcggtggaaactgcacgaccacgggctgtttagtggacttaaacggcgcgtgtccgacagaactaaaggtgaaaattgcggc 117  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  31945297 cagtggaaccaagtggcggcagtggaaactgcacgactacgggctgtttagtagacttaaatggcgcgtgtccgacagaactaaaggtgaaaattgcggc 31945198  T
Q  118 ggaaggtgaagggagtgatgaaaagagcgtggcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccg 217  Q
    |||||  |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31945197 ggaagaagaagggagtgatgaaaagagcgtggcatgtaaaagcgcgtgcgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccg 31945098  T
Q  218 cagacttgtaagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacctgtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31945097 cagacttgtaagccaagttcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacttgtt 31944998  T
Q  318 cctctgcagattacctcattactttctgttctacacattccaaagggtattgtattgtagttcaatcttctgattttttgttttaagtagaaaatnnnnn 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  31944997 cctctgcagattacctcattactttctgttctacacattccaaagggtattgtattgtagttcaatcttctgattttttgttttaagtagaaaat-aaaa 31944899  T
Q  418 nntaactagaaatgtatttgagtgcatgcagttcgatcaagtcagggaccggaaaactcccgtttggagtggacatttgggcaggacaagcccatggcca 517  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31944898 aataactagaaatgtatttgagtgcatgcagttcgatcaagtcagggaccggaaaactcccgtttggagtggacatttgggcaggacacgcccatggcca 31944799  T
Q  518 tgctgataagtcaaccaaggggatgtctctagttgtggcagcagttttcatgacaatttggtggcagctcagttaggcgtgcggatttagattccatgca 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31944798 tgctgataagtcaaccaaggggatgtctctagttgtggcagcagttttcatgacaatttggtggcagctcagttaggcgtgcggatttaaattccatgca 31944699  T
Q  618 gttattgattttgatcgtctagtagtttgtttgtttctgtg 658  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31944698 gttattgattttgatcgtctagtagtttgtttgtttctgtg 31944658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 149 - 306
Target Start/End: Complemental strand, 14039453 - 14039296
Alignment:
Q  149 gcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagt 248  Q
    ||||||||||||||||||||||| ||||| ||||||   |||||||| | ||||||||| |   ||||  | || || ||||||||||||||||| ||||    
T  14039453 gcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagt 14039354  T
Q  249 tcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcac 306  Q
    | |||||||| || ||||| |||||||||||||| ||||||||||||| ||| |||||    
T  14039353 ttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatgaaacaagcac 14039296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 149 - 330
Target Start/End: Complemental strand, 18954424 - 18954243
Alignment:
Q  149 gcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagt 248  Q
    ||||||||||||||||||||||| ||||| ||||     |||||||| ||||||||||| |  |||||  | || || ||||||||||| ||||| || |    
T  18954424 gcgtgtaaaagcgcgtgtgaagcgtttggagatctgcaatattgttgtaatggcgcttacgctactccagatacatgcaagccaagttcgtactcacaat 18954325  T
Q  249 tcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacctgttcctctgcagatta 330  Q
    |||| ||||| || |||||||| |||||||| |||||||||||||||||||| ||||| ||| | ||| | |||||||||||    
T  18954324 tctttaagagtgcatgtccacgtgcttatagttatgcttatgatgatggaacaagcactttcgcttgtgcttctgcagatta 18954243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 136 - 330
Target Start/End: Original strand, 8798164 - 8798358
Alignment:
Q  136 tgaaaagagcgtggcgtgtaaaagcgcgtgtgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagt 235  Q
    |||| ||||||||||||||||||||||||||||||| ||||| |||||    ||||| |||| ||||||||||||  | ||| | || ||||| ||||||    
T  8798164 tgaagagagcgtggcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatggttccccggatacgtgtaaaccaagt 8798263  T
Q  236 tcatactcgcagttcttcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacctgttcctctgcagatta 330  Q
    || ||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||| | ||||| |||||    
T  8798264 tcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatggaactagcactttcacttgtgcttctgctgatta 8798358  T

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