View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_130 (Length: 280)
Name: NF20633_low_130
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_130 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 2357050 - 2357299
Alignment:
| Q |
18 |
agaagctattaacacagaactataatatattttcagcaagtg---tctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaact |
114 |
Q |
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| T |
2357050 |
agaagctattaacacagaactataatatattttcagcaatctcactctacatcatcatggcatacttcttaatttgtgtgctccaaattctcttacagtt |
2357149 |
T |
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| Q |
115 |
acaacatcctgttactatttttccaatctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattgctatg |
214 |
Q |
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| T |
2357150 |
acaacatcctgttactatttttccaatctcactcatactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattgctttg |
2357249 |
T |
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| Q |
215 |
atcaatttggccttatggctccttattttcacatttgttgtcatcttcta |
264 |
Q |
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| T |
2357250 |
atcaatttggccttatggctccttattttcacatttgttgtcatcttcta |
2357299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 44 - 262
Target Start/End: Original strand, 2089149 - 2089376
Alignment:
| Q |
44 |
atattttcagcaagtgtctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactac--aac-------atcctgttactattt |
134 |
Q |
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| T |
2089149 |
atatattctgcaagtgtctacatgattatggcattcttcttagtttgggtgctccaaactctcttacaacaacctatctctagtgattttgttagtattt |
2089248 |
T |
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| Q |
135 |
ttccaatctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattgctatgatcaatttggccttatggct |
234 |
Q |
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| T |
2089249 |
ttccaatctcactcttactcatgttggggtatgctgtgtcctttttagccttgacactgatttcacggaacattgctctgataactctggtcttatggct |
2089348 |
T |
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| Q |
235 |
ccttattttcacatttgttgtcatcttc |
262 |
Q |
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| T |
2089349 |
ccttattttcacatttgttgtcatcttc |
2089376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 35 - 243
Target Start/End: Original strand, 1559287 - 1559479
Alignment:
| Q |
35 |
aactataatatattttcagcaagtgtctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactacaacatcctgttactattt |
134 |
Q |
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| T |
1559287 |
aactatactttattttcagcaagtgtctacatcattatggcatacttcttagtttgtctgctccaaa------tg----------attctgttagtattt |
1559370 |
T |
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| Q |
135 |
ttccaatctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattgctatgatcaatttggccttatggct |
234 |
Q |
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| T |
1559371 |
tccaaatctcactcttactcttgttggggtatgctttgtcctttttagccttgacactgatttcactgaacattgctgtgattactcttgtcttatggct |
1559470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 2073499 - 2073316
Alignment:
| Q |
44 |
atattttcagcaagtgtctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactacaacatcctgttac---tatttttccaa |
140 |
Q |
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| T |
2073499 |
atatattctgcaagtgtctacatgattatggcatacttcttagtttgggtgctccaaactctcttacaacaacctattcctaattctggtcttttcccta |
2073400 |
T |
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| Q |
141 |
tctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattgctatgatcaatttgg |
224 |
Q |
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| T |
2073399 |
tctcactcttgctctcgttggggtgtgctgtttcttttttagcgttgacactgatttcactcaatattgctgtgatcaatttgg |
2073316 |
T |
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