View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_134 (Length: 271)
Name: NF20633_low_134
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_134 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 34512829 - 34513090
Alignment:
| Q |
1 |
aattagtccactcacaatgcagctaatgataaatttgtaacctaaatttcatacaaagtagtccataataagttggaattgatatgaaatcaaaatgcaa |
100 |
Q |
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| T |
34512829 |
aattagtccactcacaatgcagttaatgataaatttgtaacctaaatttcatacaaagtagtccataataagttggaattgatatgaaatcaacatgcaa |
34512928 |
T |
|
| Q |
101 |
-tgtgacatctttagttaatgtgtcacatcataatctttaaccttataaattactaacaaagtgattgttttcagtgttatttttaaatttcatgattat |
199 |
Q |
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| T |
34512929 |
atgtgacatctttagttaatgtgtcacatcataatctttaaccttataaattactaacaaagtgattgttttcagtgttattattaaatttcatgattat |
34513028 |
T |
|
| Q |
200 |
ttgtcaattcacgaatgaatgtttacaatctcagtgaccaatttactccctctgtccctatg |
261 |
Q |
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| T |
34513029 |
ttgtcaattcacggatgaatgtttacaatctcagtgaccaatttactccctctgtccctatg |
34513090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 34530018 - 34530122
Alignment:
| Q |
100 |
atgtgacatctttagttaatgtgtcacatcataatctttaaccttataaattactaacaaagtgattgttttcagtgttatttttaaatttcatgattat |
199 |
Q |
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| T |
34530018 |
atgtggcatgtttaattagtgtgtcatatcataacctctaaccttaaaaat----aacaaagtgattgtattcaatattattttaaaatttgatgattat |
34530113 |
T |
|
| Q |
200 |
ttgtcaatt |
208 |
Q |
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| T |
34530114 |
ttgtcaatt |
34530122 |
T |
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