View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_139 (Length: 267)
Name: NF20633_low_139
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_139 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 29198311 - 29198075
Alignment:
| Q |
17 |
atgaaatagtaccatagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaaatt |
116 |
Q |
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| T |
29198311 |
atgaaatagtaccacagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaagtt |
29198212 |
T |
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| Q |
117 |
tgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaatacc |
216 |
Q |
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| T |
29198211 |
tgcttcatcaatctttgacaagcatacagaaaaattaaataatgtaaaaaaatacaaatccttaaataacgctagggtaattccaccaaacaggaatacc |
29198112 |
T |
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| Q |
217 |
aataacaacactattagagttcttggtaccaacatca |
253 |
Q |
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| T |
29198111 |
aataacaacactattagagttcttggtaccaacatca |
29198075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 12271428 - 12271353
Alignment:
| Q |
178 |
ttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatca |
253 |
Q |
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| T |
12271428 |
ttaaataatgttagggtaattccaccaaacaggaataccaataacagcaccattagagttcttcgtaccaacatca |
12271353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 12267577 - 12267449
Alignment:
| Q |
120 |
ttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaat |
219 |
Q |
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| T |
12267577 |
ttcatcaatctttaacaagcatgcaaaaaaatgaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccatcaaaagggaaaaccaat |
12267480 |
T |
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| Q |
220 |
aacaacactattagagttcttggtaccaaca |
250 |
Q |
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| T |
12267479 |
agcaacaccattagagttcttgacaccaaca |
12267449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 12288103 - 12288019
Alignment:
| Q |
169 |
tacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatca |
253 |
Q |
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| T |
12288103 |
tacaaatctttaaacaatgccggggtaattccacctaaaaggaataccaataacacctccattagagttcttggtaccaacatca |
12288019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 252
Target Start/End: Complemental strand, 12257512 - 12257353
Alignment:
| Q |
87 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
186 |
Q |
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| T |
12257512 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12257419 |
T |
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| Q |
187 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatc |
252 |
Q |
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| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
12257418 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatc |
12257353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 252
Target Start/End: Complemental strand, 12264904 - 12264745
Alignment:
| Q |
87 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
186 |
Q |
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||||||||| ||||| ||||||| |||||| |||||| ||||||||||||| || || |||||| ||||||| | || |||| |||||||| |
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| T |
12264904 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12264811 |
T |
|
| Q |
187 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatc |
252 |
Q |
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| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
12264810 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatc |
12264745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 252
Target Start/End: Complemental strand, 12283297 - 12283170
Alignment:
| Q |
123 |
atcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataac |
222 |
Q |
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||||||||||||||||||| || |||||| ||||||||| |||||||| |||||||| | |||||||||||||||||| |||| ||||||| | |
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| T |
12283297 |
atcaatctttgacaagcatgcaaaaaaattaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccaccaaaagggaaaaccaatagc |
12283200 |
T |
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| Q |
223 |
aacactattagagttcttggtaccaacatc |
252 |
Q |
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||||| |||| |||||||| ||||||||| |
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| T |
12283199 |
aacaccattacagttcttgacaccaacatc |
12283170 |
T |
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