View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_143 (Length: 264)
Name: NF20633_low_143
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_143 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 43095429 - 43095197
Alignment:
| Q |
20 |
acactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43095429 |
acactaagcataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttctgctgcaattggcgt |
43095330 |
T |
|
| Q |
120 |
tgaaaagattgattctcctcagacattctgattttcctcgcactaacttgagactgcaatcgcgaaagagtttgcatgcattgtaaagtagtagccgctt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43095329 |
tgaaaagattgattctcctcagacattctgattttcctcgcactaacttgagattgcaatcgcgaaagagtttgcatgcattgtaaagtagtagccgctt |
43095230 |
T |
|
| Q |
220 |
gccgctgaactgattgtccttttacctatgctt |
252 |
Q |
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|||||||||| ||||||||||||||| |||||| |
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| T |
43095229 |
gccgctgaacagattgtccttttaccaatgctt |
43095197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 6094871 - 6095104
Alignment:
| Q |
19 |
cacactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcg |
118 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
6094871 |
cacattaaccataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttcattttcacgtttctgctgcaattggcg |
6094970 |
T |
|
| Q |
119 |
ttgaaaagattgattctcctcagacattctgattttcctcgcactaacttgagactgcaatcgcgaaagagtttgcatgcattgtaaagtagtagccgct |
218 |
Q |
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| T |
6094971 |
ttgaaaagattgattctcttcagacattcttatcttcctcgcactaacttgagactgcaaccgtgaaagagtttgcatgcattgtaaagtagtagctgct |
6095070 |
T |
|
| Q |
219 |
tgccgctgaactgattgtccttttacctatgctt |
252 |
Q |
| |
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|| || ||||| ||||||||||||||| |||||| |
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| T |
6095071 |
tgtcgttgaacagattgtccttttaccaatgctt |
6095104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 44162605 - 44162744
Alignment:
| Q |
19 |
cacactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcg |
118 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
44162605 |
cacattaaccataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcg |
44162704 |
T |
|
| Q |
119 |
ttgaaaagattgattctcctcagacattctgattttcctc |
158 |
Q |
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||||||||||| |||||| ||||||||||| || |||||| |
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| T |
44162705 |
ttgaaaagattcattctcttcagacattcttatcttcctc |
44162744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 44188725 - 44188864
Alignment:
| Q |
19 |
cacactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcg |
118 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
44188725 |
cacattaaccataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcg |
44188824 |
T |
|
| Q |
119 |
ttgaaaagattgattctcctcagacattctgattttcctc |
158 |
Q |
| |
|
||||||||||| |||||| ||||||||||| || |||||| |
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| T |
44188825 |
ttgaaaagattcattctcttcagacattcttatcttcctc |
44188864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 44188866 - 44188930
Alignment:
| Q |
188 |
agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttacctatgctt |
252 |
Q |
| |
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|||||||||||||||| |||||||||||||||| || ||||| | |||||||||||| |||||| |
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| T |
44188866 |
agtttgcatgcattgtgaagtagtagccgcttgtcgttgaacataatgtccttttaccaatgctt |
44188930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 44162746 - 44162810
Alignment:
| Q |
188 |
agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttacctatgctt |
252 |
Q |
| |
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|||||||||||||||| |||||||||| | ||| || ||||| | |||||||||||| |||||| |
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| T |
44162746 |
agtttgcatgcattgtgaagtagtagcagattgtcgttgaacaaaatgtccttttaccaatgctt |
44162810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 32727865 - 32727992
Alignment:
| Q |
31 |
aatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
32727865 |
aatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattc |
32727964 |
T |
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| Q |
131 |
attctcctcagacattctgattttcctc |
158 |
Q |
| |
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|||||| ||||||||||| || |||||| |
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| T |
32727965 |
attctcttcagacattcttatcttcctc |
32727992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 32718881 - 32719008
Alignment:
| Q |
31 |
aatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattg |
130 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
32718881 |
aatcataaaaataaattaatattgaataaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattc |
32718980 |
T |
|
| Q |
131 |
attctcctcagacattctgattttcctc |
158 |
Q |
| |
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|||||| ||||||||||| || |||||| |
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| T |
32718981 |
attctcttcagacattcttatcttcctc |
32719008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 32719010 - 32719074
Alignment:
| Q |
188 |
agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttacctatgctt |
252 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| || ||||| || |||||||||||| |||||| |
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|
| T |
32719010 |
agtttgcatgcattgtgaagtagtagccgcttgtcgttgaacagaatgtccttttaccaatgctt |
32719074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 32727994 - 32728058
Alignment:
| Q |
188 |
agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttacctatgctt |
252 |
Q |
| |
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|||||||||||||||| |||||||||| | ||| || ||||| | |||||||||||| |||||| |
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| T |
32727994 |
agtttgcatgcattgtgaagtagtagcagattgtcgttgaacaaaatgtccttttaccaatgctt |
32728058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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