View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_145 (Length: 262)
Name: NF20633_low_145
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_145 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 262
Target Start/End: Original strand, 49233310 - 49233520
Alignment:
| Q |
51 |
tgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctttggtagagcctacaatatcaacgatctctttgccacttaatt |
150 |
Q |
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| T |
49233310 |
tgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctt-ggtagagcctacaatatcaacgatctgcttgccacttaatt |
49233408 |
T |
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| Q |
151 |
tgctacacggttggtctcaatgacggtttggttattatcactctgcctattgtcagaaatggttgaatctgcactctcgattacagggttctgcaaagga |
250 |
Q |
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| T |
49233409 |
tgctacacggttagtctcaatgacggtttggttattatcactctgcctattgtcagacttggttgaatctgcactctcgattacagggttctgcaaagga |
49233508 |
T |
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| Q |
251 |
ccatgaactcgt |
262 |
Q |
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| T |
49233509 |
ccaggaactcgt |
49233520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 50863209 - 50862957
Alignment:
| Q |
9 |
agcagagacatagcttttcaaactaatccttctcaaccttattgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctt |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50863209 |
agcagacacatagcttttcaaactaatccttctcaaccttagtgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctt |
50863110 |
T |
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| Q |
109 |
tggtagagcctacaatatcaacgatctctttgccacttaatttgctacacggt-tggtctcaatgacggtttggttattatcactctgcctattgtcaga |
207 |
Q |
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| T |
50863109 |
t--tagggcctacaatgtcaacggtccgcttgccacttaatttgctacacggtgtagtctcaatgacggtttggttattatcaccctgcctgttgtcaga |
50863012 |
T |
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| Q |
208 |
aatggttgaatctgcactctcgattacagggttctgcaaaggaccatgaactcgt |
262 |
Q |
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| T |
50863011 |
cttggttgaatccgcactctcgattatagggttctgcaaaggaccaggaactcgt |
50862957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 20634 - 20453
Alignment:
| Q |
9 |
agcagagacatagcttttcaaactaatccttctcaaccttattgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
20634 |
agcagagacatagcttttcaaactaatccttctcaaccttagtgcacttcactttccgtgttttgtaggttgagttatcccccaatacagttccaagc-t |
20536 |
T |
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| Q |
109 |
tggtagagcctacaatatcaacgatctctttgccacttaatttgctacacggt-tggtctcaatgacggtttggttattatca |
190 |
Q |
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| T |
20535 |
tggtagggcctacaatggcaacggtccgcttgtcacttaatttgctacacgatgtagtctcaatgacggtttggttattatca |
20453 |
T |
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