View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_149 (Length: 258)
Name: NF20633_low_149
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_149 |
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| [»] scaffold0047 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 39069151 - 39069394
Alignment:
| Q |
1 |
tttttaaaaatgcaattcatgtgctgatataacgacttcttgtggattttcctctcaaacttttacttagcggaattatatctcaacttttattggtccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39069151 |
tttttaaaaatgcaattcatgtgctgatataacgacttcttgtggattttcctctcaaacctttacttagcggaattatatctcaacttttattggtccc |
39069250 |
T |
|
| Q |
101 |
attttttatcaggatattgtttgttaaagtgagtatataggataatatgcaattnnnnnnncttgtaactcatcaatttaataatttaagtttggcgtta |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39069251 |
attttttatcagaatattgtttgttaaagtgagtatataggataatatgcaattaaaaaaacttgtaactcatcaatttaataatttaagtttggcgtta |
39069350 |
T |
|
| Q |
201 |
atataatattgagtgagagagtggtaaatagatatggaatatga |
244 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
39069351 |
atatagtattgagtgagaaagtggtaaatagatatggaatatga |
39069394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43502400 - 43502641
Alignment:
| Q |
1 |
tttttaaaaatgcaattcatgtgctgatataacgacttcttgtggattttcctctcaaacttttacttagcggaattatatctcaacttttattggtccc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43502400 |
ttttaaaaaatgcaattcatgtgctgatataacgacctcttgtggattttcctctcaaacttttacttagcggaattatatctcaacttttattggtccc |
43502499 |
T |
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| Q |
101 |
attttttatcaggatattgtttgttaaagtgagtatataggataatatgcaatt-nnnnnnncttgtaactcatcaatttaataatttaagtttggcgtt |
199 |
Q |
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| T |
43502500 |
attttttatcagtatattgtttgttaaagtgagtatataggataatatgcaattaaaaaaaacttgtaactcatcaatttaataatttaagtttggcgtt |
43502599 |
T |
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| Q |
200 |
aatataatattgagtgagagagtggtaaatagatatggaata |
241 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| |
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| T |
43502600 |
aatatagtattgagtgagagaatggtaaatagatatggaata |
43502641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 39069808 - 39069938
Alignment:
| Q |
114 |
atattgtttgttaaagtgagtatataggataatatgcaattnnnnnnncttgtaactcatcaatttaataatttaagtttggcgttaatataatattgag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
39069808 |
atattgtttgttaaagtgagtatataggataatatgcaattaaaaaaacttgtaactcatcaatttaataatttaagtttggcgttactatagtattgag |
39069907 |
T |
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| Q |
214 |
tgagagagtggtaaatagatatggaatatga |
244 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
39069908 |
tgagagagtggtaaatagatatggaatatga |
39069938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 49102 - 48995
Alignment:
| Q |
1 |
tttttaaaaatgcaattcatgtgctgatataacgacttcttgtggattttcctctcaaacttttacttag-cggaattatatctcaacttttattggtcc |
99 |
Q |
| |
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|||| ||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| | ||||||||| |||| |
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| T |
49102 |
ttttaaaaaatgcaattcctatgctgatatgacgacttcttacggattttcctctcaaacttttacttagtgggaattatattccgacttttattagtcc |
49003 |
T |
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| Q |
100 |
catttttt |
107 |
Q |
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|||||||| |
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| T |
49002 |
catttttt |
48995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 48941 - 48818
Alignment:
| Q |
119 |
gtttgttaaagtgagtatataggataatatgcaattnnnnnnncttgtaactcatcaatttaataatttaagtttggcgttaatataatattgagtgaga |
218 |
Q |
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||||||||| |||| |||||||||| |||||||||| |||||| |||||||||||| |||||||| ||| |||||| |||||||||| | | |
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| T |
48941 |
gtttgttaaggtgaatatataggatgatatgcaattaaaaaaacttgtatctcatcaatttattaatttaaattttacgttaacataatattga--gcaa |
48844 |
T |
|
| Q |
219 |
gagtggtaaatagatatggaatatga |
244 |
Q |
| |
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| ||||||||||| |||||||||||| |
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| T |
48843 |
gcgtggtaaatagttatggaatatga |
48818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 32562910 - 32562820
Alignment:
| Q |
7 |
aaaatgcaattcatgtgctgatataacgacttcttgtggattttcctctcaaacttttacttagcggaattatatctcaacttttattggt |
97 |
Q |
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||||||||| ||||||| |||||||||| |||||| | | |||||||||||||||||||||||| | |||| |||| ||||||| |||||| |
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| T |
32562910 |
aaaatgcaaatcatgtgatgatataacggcttcttttcgtttttcctctcaaacttttacttagggaaattttatcccaactttcattggt |
32562820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 32562714 - 32562632
Alignment:
| Q |
162 |
cttgtaactcatcaatttaataatttaagtttggcgttaatataatattgagtgagagagtggtaaatagatatggaatatga |
244 |
Q |
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||||||| |||| |||||| |||||||| || ||||||||||| |||||||| |||||||||||||||| | | |||||||| |
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| T |
32562714 |
cttgtaaatcataaatttattaatttaaaatttgcgttaatatagtattgagtaagagagtggtaaatagttttagaatatga |
32562632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 29317781 - 29317705
Alignment:
| Q |
163 |
ttgtaactcatcaatttaataatttaagtttggcgttaatataatattgagtgagagagtggtaaatagatatggaa |
239 |
Q |
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|||||||||||||||||| |||||||| ||| || ||||||||||| ||||||||||||| ||||||| ||||||| |
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| T |
29317781 |
ttgtaactcatcaatttattaatttaaattttacggtaatataatatagagtgagagagtgataaatagttatggaa |
29317705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 26633244 - 26633184
Alignment:
| Q |
8 |
aaatgcaattcatgtgctgatataacgacttcttgtggattttcctctcaaacttttactt |
68 |
Q |
| |
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||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
26633244 |
aaatgcaattcatatgcctatataacgacttcttttggattttcatctcaaacttttactt |
26633184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 29317925 - 29317845
Alignment:
| Q |
28 |
tataacgacttcttgtggattttcctctcaaacttttacttagcggaattatatctcaacttttattggtcccatttttta |
108 |
Q |
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||||| ||||| || | |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
29317925 |
tataatgacttattttagattttcctctcaaacttttacttgatggaattttatccagacttttattggtcccatttttta |
29317845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 25866350 - 25866449
Alignment:
| Q |
7 |
aaaatgcaattcatgtgctgatataacgacttcttgtggattttcctctcaaacttttacttagcggaattatatctcaacttttattggtcccattttt |
106 |
Q |
| |
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||||| |||||||| |||| ||||||| | ||||| ||||||||||||||||| |||| ||||| |||||| | | |||||||||||||||| ||||| |
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| T |
25866350 |
aaaatacaattcatatgctaatataacaa-ttcttttggattttcctctcaaaattttgcttagtggaattttcttcaaacttttattggtccccttttt |
25866448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 25866541 - 25866611
Alignment:
| Q |
162 |
cttgtaactcatcaatttaataatttaagtttggcgttaatataatattgagtgagagagtggtaaataga |
232 |
Q |
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||||||||| || |||||| ||||| | ||| ||||||||||| |||||||||| | ||||||||||||| |
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| T |
25866541 |
cttgtaacttattaatttataaatttgaattttgcgttaatatagtattgagtgaaaaagtggtaaataga |
25866611 |
T |
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