View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_15 (Length: 634)
Name: NF20633_low_15
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 130 - 537
Target Start/End: Complemental strand, 13007080 - 13006674
Alignment:
| Q |
130 |
tatcagttcataacatttcttgaaagaggtaatgtgtagataaagaaaatgttcataagccttcttgtgtatatcatgaaagcactgtcatttccatctt |
229 |
Q |
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| T |
13007080 |
tatcagttcataacatttcttgaaagaggtaatgtgtagataaagaaaatgttcataagccttcttgtgtatatcatgaaagcactgtcatttccatctt |
13006981 |
T |
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| Q |
230 |
tcaagaaagcaaatattaaatcactacagaggcctataaaaatgttttcaatcttctaatccttccttttctcatcttgtatattagtctttgtgcttac |
329 |
Q |
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| T |
13006980 |
tcaagaaagcaaatattaaatcactacagaggcctataaaaatgttttcaatcttctaatccttccttttctcatcttgtatattagtctttgtgcttac |
13006881 |
T |
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| Q |
330 |
tagaatttttcattctatatttactgattgtaacggttcaagagagttcgtccaatgccataacagtgttatgtggtataagagacaagaaacaaatata |
429 |
Q |
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| T |
13006880 |
tagaatttttcattctatatttactgattgtaac-gttcaagagagttcgtccaatgccataacagtgttatgtggtataagagacaagaaacaaatata |
13006782 |
T |
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| Q |
430 |
ctatatcttgtggattagaaagctaatgcatggatttttgttttgttaactatgttattgttattggtgtaaagtattcgccaactttgttgatgactag |
529 |
Q |
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| T |
13006781 |
ctatttcttgtggattagaaaactaatgcatggatttttgttttgttaactatgttattgttattggtgtaaactattcgccaactttgttgatgactag |
13006682 |
T |
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| Q |
530 |
tctctgtt |
537 |
Q |
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| T |
13006681 |
tctctgtt |
13006674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 537 - 618
Target Start/End: Complemental strand, 13006484 - 13006403
Alignment:
| Q |
537 |
tagagaacacatgatatttgatcactaagttcagccaattatgcttaggtctccgactgaagagcagctacaatatctttct |
618 |
Q |
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| T |
13006484 |
tagagaacacatgatatttgatcacaaagttcagccaattatgcttaggtcttcgactgaagagcagctacaatatctttct |
13006403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 13007157 - 13007117
Alignment:
| Q |
53 |
ggcatattatcattagtgtaatgggatctaatatcatcaac |
93 |
Q |
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| T |
13007157 |
ggcatattatcattagtgtaatgggatctaatatcatcaac |
13007117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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