View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_156 (Length: 251)
Name: NF20633_low_156
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_156 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 45768227 - 45768466
Alignment:
| Q |
12 |
atcagaatcattgtctgaattagtagaccctacatcccaaagaccttgaaaaggccttctagtagaactgtattcctcaaactcatgcctttgtcttggt |
111 |
Q |
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| T |
45768227 |
atcagaatcattgtctgaattagtagaccctacatcccaaagaccttgaaaaggccttctagtagaactgtattcctcaaactcatgcctttgtcttggt |
45768326 |
T |
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| Q |
112 |
gcactttgtgatctaaccttagctttagaagattcagtgtttgccatgtaattagggtaaccagagtaaccacctaagaaactccatgaacactcacttc |
211 |
Q |
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| T |
45768327 |
gcactttgtgatctaaccttagctctagaagattcagtgtttgccatgtaattagggtaaccagagtaaccacctaagaaactccatgaacactcacttc |
45768426 |
T |
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| Q |
212 |
ttgtaggtgtaaagggggtatttcttcttacaccacttcc |
251 |
Q |
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| T |
45768427 |
ttgtaggtgtaaagggggtatttcttcttacaccacttcc |
45768466 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 46632760 - 46632696
Alignment:
| Q |
98 |
gcctttgtcttggtgcactttgtgatctaaccttagctttagaagattcagtgtttgccatgtaa |
162 |
Q |
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| T |
46632760 |
gcctttgttttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaa |
46632696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 39632 - 39810
Alignment:
| Q |
46 |
tcccaaagaccttgaaaaggccttctagtagaactgtattcctcaaactcatgcctttgtcttggtgcactttgtgatctaaccttagctttagaagatt |
145 |
Q |
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| T |
39632 |
tcccaaagaccttgaatagacctattagatgaaccgtatctctcaaactcaagcctttgtcttggagcactttgtgacctaaccttagccctagaagatt |
39731 |
T |
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| Q |
146 |
cagtgtttgccatgtaattagggtaaccagagtaaccacctaagaaactccatgaacactcacttcttgtaggtgtaaa |
224 |
Q |
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| T |
39732 |
gagtatttgccatataactaggataaccagagtgagcattgaaaaatccccatgaactctcacttttagtaggtgtaaa |
39810 |
T |
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