View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_159 (Length: 250)
Name: NF20633_low_159
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_159 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 12692982 - 12693226
Alignment:
| Q |
1 |
attggattgaaagattttcatatcgtagttggaatcgttgtttttaaagattttggaaacgaagcttcaattgttatttgtctttcatacagtgaaaatg |
100 |
Q |
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| T |
12692982 |
attggattgaaagattgccatatcgtagttggaatcgttgtttttaaagattttgaaaacgatgcttcaattgttatttgtctttcatacagtgaaaatg |
12693081 |
T |
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| Q |
101 |
ttcttttgtacgagcttctgagagcaattgaaatatcaaagaattcatttagttgtattttatactaattttgatttcgatgctatagaaaggtctgctc |
200 |
Q |
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| T |
12693082 |
ttcttttgtacgagcttctgagagcaattgaaatatcaaagaattcatttagttgtattttatactaattttgatttcgatgttatagaaaggtctgctc |
12693181 |
T |
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| Q |
201 |
cacacaacctagtggtttaaagctagatgataaacctttgctact |
245 |
Q |
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| T |
12693182 |
cacacaaactagtggtttaaagctagatgataaacctttgttact |
12693226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 12689431 - 12689355
Alignment:
| Q |
162 |
atactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
238 |
Q |
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| T |
12689431 |
atactaattttgaattcaatgttataggaaggtgtgctccacacaacctagtggttaaaagctagatgataaacctt |
12689355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 12696164 - 12696067
Alignment:
| Q |
141 |
gaattcatttagttgtattttatactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
238 |
Q |
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| T |
12696164 |
gaattcatttagttggagtcaatactaattttgaaatcaatgttatagtaacgtgtgctccacacaacctagtggttgaaagctagacgataaacctt |
12696067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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