View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_16 (Length: 631)
Name: NF20633_low_16
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 241 - 614
Target Start/End: Complemental strand, 6640531 - 6640156
Alignment:
| Q |
241 |
gaagaaacttggaaaactctagcattcataagccttgttgcatcgggtatgagctctttcaatgtacccatcttctcattctgcagagcgcagacatctg |
340 |
Q |
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| T |
6640531 |
gaagaaacttggaaaactctagcattcataagccttgttgcatcgggtatgagctctttcaatgtacccatcttctcattctgcagagcgcagagatctg |
6640432 |
T |
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| Q |
341 |
caagctttcaacttgatcgagtaataaattcaaaagttaaaagtgtagagttaataattggggaaaaccaaggacaaacaagaaaccaacatcacaaatt |
440 |
Q |
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| T |
6640431 |
caagctttcaacttgatcgagtaataaattcaaaagttaaaagtgtagagttaataattggggaaaaccaaggacaaacaagaaaccaacatcacaaatt |
6640332 |
T |
|
| Q |
441 |
aaatatcatagatctataaaaccatgacagcattgaagtattaaataaaaatttattggttctaaaggtttgtgataccttcgtttgaatattcatatc- |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6640331 |
aaatatcatagatctataaaaccatgacagcattgaagtattaaataaaaatttattggttctaaaggtttgtgattccttcgtttgaatattcatatca |
6640232 |
T |
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| Q |
540 |
-ttgtatcaacctagaaaattggagagcaataatatgttataaaattaataagaagcatgtttttcacaccaaaat |
614 |
Q |
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| T |
6640231 |
gttgtatcaacctagaaaattggagagcaataatatgttataaaattaataagaagcatgtttttcacaccaaaat |
6640156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 6640751 - 6640596
Alignment:
| Q |
12 |
atgaaggatgagatggatcttaacagaggtagatgtgactgacattgtgaaaaagactccataaattgctgaaactgctgaaacacgactcctcttctga |
111 |
Q |
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| T |
6640751 |
atgaaggatgagatggatcttaacagaggtagatgtgactgacattgtgaaaaagactccataaattgctgaaac---------acgactcctcttctga |
6640661 |
T |
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| Q |
112 |
tgcatgaaaaagctcctcatgacggcatcatcaagcatgtaagataatttatccgtctataagac |
176 |
Q |
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| T |
6640660 |
tgcatgaaaaagctcctcatgacggcatcatcaagcatgtaagataatttatccgtctataagac |
6640596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 15129749 - 15129701
Alignment:
| Q |
474 |
tgaagtattaaataaaaatttattggttctaaaggtttgtgataccttc |
522 |
Q |
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| T |
15129749 |
tgaagtactaaataaaaatttattggttctaaaggtatgtgataccttc |
15129701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 8730411 - 8730453
Alignment:
| Q |
37 |
gaggtagatgtgactgacattgtgaaaaagactccataaattg |
79 |
Q |
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| T |
8730411 |
gaggtagatgtgaatgacctggtgaaaaagactccataaattg |
8730453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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