View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_162 (Length: 250)
Name: NF20633_low_162
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_162 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 5121317 - 5121080
Alignment:
| Q |
13 |
aaaatgatttatgtgtgctcttaaaggtttcttgaaatccatttatcaattttttattctatttttcacatctttcacttaacccacacatgtaatcaaa |
112 |
Q |
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| T |
5121317 |
aaaatgatttatgtgtgctcttaaaggtttcttgaaatccatttatcaattttttattctatttttcacatctttcacttaacccacacatgtaatcaaa |
5121218 |
T |
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| Q |
113 |
ctcttggagaagctgccaagcgttaaactaaacatgctcctctcttaagatagatttgaattgtatgaagcaagaagcttcattgtttagaatatcagtg |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5121217 |
ctcttggagaagttgccaagcgttaaactaaacatgctcctctcttaagatagatttgaattgtatgaagcaagaagcttcattgtttagaatatcagtg |
5121118 |
T |
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| Q |
213 |
agaaaaacaaaaactttcattagattttttatataaaa |
250 |
Q |
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| T |
5121117 |
agaaaaacaaaaactttcattagattttttatataaaa |
5121080 |
T |
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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 172
Target Start/End: Complemental strand, 40819325 - 40819213
Alignment:
| Q |
60 |
aattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactcttggagaagctgccaagcgttaaactaaacatgctcctctctta |
159 |
Q |
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|||||||||||||||||||||| |||||| || ||| ||||||||||||| ||||||| ||||| || | ||| ||||||||| |||||||| ||||| |
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| T |
40819325 |
aattttttattctatttttcacgtctttccctgaacacacacatgtaatccaactcttcgagaaattgtctagcactaaactaaatatgctcctttctta |
40819226 |
T |
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| Q |
160 |
agatagatttgaa |
172 |
Q |
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| T |
40819225 |
acatatatttgaa |
40819213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 9516263 - 9516320
Alignment:
| Q |
60 |
aattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactctt |
117 |
Q |
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|||||||||||||||||||||| |||||| |||||| ||||||||||||| ||||||| |
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| T |
9516263 |
aattttttattctatttttcacgtctttcccttaacacacacatgtaatccaactctt |
9516320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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