View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_166 (Length: 248)
Name: NF20633_low_166
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_166 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 34806249 - 34806012
Alignment:
| Q |
6 |
gtgtcagtgtctagcgccagcacgatactaaacatatgtagttacattcaagtaattccattttcttaaattattatcggcgtctacgtgtcagtgtatc |
105 |
Q |
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| T |
34806249 |
gtgtcagtgtctagcgtcagcaccatactaaacatatgtagttacattcaagtaattccattttcttaaattattatcggtgtctacgtgtcagtgtatc |
34806150 |
T |
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| Q |
106 |
ttaagtcatagcaaatcacagactttttaaaattttacctttaaatactcaaagagaacatcaaactgatcaccaaaattggtaccatcagcacgagtgc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34806149 |
ttaagtcatagcaaatcacagactttttaaaattttacctttaaatactcaaagagaacatcaaactgatcaccaaaattggtaccatcagcacgagtgc |
34806050 |
T |
|
| Q |
206 |
gtctaatgatcaaagaagacaaagcctcctatgcttct |
243 |
Q |
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| T |
34806049 |
gtctaatgatcaaagaagacaaagcctccaatgcttct |
34806012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 29587732 - 29587668
Alignment:
| Q |
37 |
acatatgtagttacattcaagtaattccattttcttaaattattatcggcgtctacgtgtcagtg |
101 |
Q |
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| T |
29587732 |
acatatgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagtg |
29587668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 2468479 - 2468545
Alignment:
| Q |
36 |
aacatatgtagttacattcaagtaattccattttcttaaattattatcggcgtctacgtgtcagtgt |
102 |
Q |
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| T |
2468479 |
aacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgt |
2468545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 4382897 - 4382840
Alignment:
| Q |
41 |
atgtagttacattcaagtaattccattttcttaaattattatcggcgtctacgtgtca |
98 |
Q |
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| T |
4382897 |
atgtagttaaattcaattactttcattttctttaattattatcggtgtctacatgtca |
4382840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 27131679 - 27131745
Alignment:
| Q |
36 |
aacatatgtagttacattcaagtaattccattttcttaaattattatcggcgtctacgtgtcagtgt |
102 |
Q |
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| T |
27131679 |
aacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgt |
27131745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 13076150 - 13076187
Alignment:
| Q |
65 |
attttcttaaattattatcggcgtctacgtgtcagtgt |
102 |
Q |
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| T |
13076150 |
attttcttaaattattatcggcgtcaacgtgttagtgt |
13076187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 13538286 - 13538249
Alignment:
| Q |
65 |
attttcttaaattattatcggcgtctacgtgtcagtgt |
102 |
Q |
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| T |
13538286 |
attttcttaaattattatcggcgtcaacgtgttagtgt |
13538249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 12826018 - 12825981
Alignment:
| Q |
65 |
attttcttaaattattatcggcgtctacgtgtcagtgt |
102 |
Q |
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| T |
12826018 |
attttcttaaattattatcggcgtcaacgtgttagtgt |
12825981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 3523434 - 3523378
Alignment:
| Q |
46 |
gttacattcaagtaattccattttcttaaattattatcggcgtctacgtgtcagtgt |
102 |
Q |
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||||||||||| | ||| ||||| | ||||||||||||| |||||||||||||||| |
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| T |
3523434 |
gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt |
3523378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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